Tableau information
Concept source: d1ywhm3 amino acid (a.a.) range (GLN200)(CYS222)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN200) (THR210) H1
(PHE211) (GLY217) E2
(GLY217) (CYS222) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 82.6° E2
H3 -111.0° -139.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qvca_ : (GLN288) (GLY330) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2b2nb_ : (HIS120) (GLY149) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1st0a2 : (PRO121) (LEU144) [view usage] : d.246.1.1 |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4ac9d4 : (THR143) (ALA176) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor SelB, N-terminal domain |Methanococcus maripaludis [TaxId: 39152]
d4czma2 : (PRO279) (ARG300) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d1nnja2 : (PRO4) (LEU34) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Lactococcus lactis [TaxId: 1358]
d1pjia2 : (PRO4) (LEU34) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Lactococcus lactis [TaxId: 1358]
d3n3ka_ : (SER758) (ALA798) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d1pjaa_ : (ALA207) (PHE238) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 2 |Human (Homo sapiens) [TaxId: 9606]
d2pi0c_ : (LEU9) (GLY52) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d1rzva_ : (LEU270) (LEU319) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Agrobacterium tumefaciens [TaxId: 358]
d3qu3a_ : (LEU11) (GLN56) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3qu3c_ : (LEU11) (GLN56) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1wk9a_ : (GLU261) (HIS286) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |automated matches |Thermus thermophilus [TaxId: 274]
d2bisb_ : (SER232) (SER276) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d3e2ya_ : (ASP418) (TRP450) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3eg7f_ : (ALA0) (ASN26) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d3wbaa_ : (THR13) (PHE72) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d1wzva1 : (ALA2) (LYS48) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 L6 [TaxId: 9606]
d1h16a_ : (THR320) (MET363) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d4q4v1_ : (THR76) (LYS105) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Coxsackievirus a24 [TaxId: 12089]
d4e2da_ : (PHE4) (ALA52) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2pi0b_ : (LEU9) (GLY52) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d3iucc2 : (LYS352) (PRO369) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1iona_ : (LYS68) (ALA96) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Pyrococcus horikoshii [TaxId: 53953]
d4my5c_ : (PRO352) (GLU387) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d3ezsa_ : (ARG343) (ARG371) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d3vlaa_ : (PRO140) (SER173) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d2h3hb_ : (VAL257) (GLY300) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d3qu3b_ : (PHE12) (GLN56) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3nv8b_ : (SER428) (ASP462) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d1rzua_ : (LEU270) (LEU319) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Agrobacterium tumefaciens [TaxId: 358]
d3cxqa_ : (SER12) (ASN50) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gnia2 : (ASP341) (PRO358) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d3grob_ : (ASN212) (TRP243) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gmya_ : (ARG78) (ALA96) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
d4czjb2 : (PRO279) (LEU299) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d2x5dd_ : (ASP366) (GLY398) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2irfg_ : (ARG9) (PRO53) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor-2, IRF-2 |Mouse (Mus musculus) [TaxId: 10090]
d1wsta1 : (GLY372) (VAL415) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Multiple substrate aminotransferase, MSAT |Thermococcus profundus [TaxId: 49899]
d1cm5a_ : (THR320) (MET363) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1rqga1 : (ASN399) (LYS441) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Methionyl-tRNA synthetase (MetRS) |Pyrococcus abyssi [TaxId: 29292]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.93, b.50, c.37, c.7, c.55, b.121, d.3, c.87, d.108, d.20, d.98, a.4, b.113, b.51, a.27, g.7, d.246