Tableau information
Concept source: d3lupa_ amino acid (a.a.) range (ASP238)(LEU269)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP238) (GLY251) H1
(GLU257) (GLY263) E2
(GLY263) (LEU269) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 151.5° E2
H3 92.2° -80.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pgla_ : (LYS84) (VAL102) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1adja1 : (ALA367) (GLY392) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d2hqyb1 : (GLN139) (ASN179) [view usage] : d.108.1.4 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |FemXAB nonribosomal peptidyltransferases |Hypothetical protein BT3689 |Bacteroides thetaiotaomicron [TaxId: 818]
d1wp9a1 : (THR169) (TYR198) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |putative ATP-dependent RNA helicase PF2015 |Pyrococcus furiosus [TaxId: 2261]
d3bohb_ : (THR15) (VAL43) [view usage] : c.154.1.1 |CdCA1 repeat-like |CdCA1 repeat-like |CdCA1 repeat-like |Cadmium-specific carbonic anhydrase CdCA1 |Thalassiosira weissflogii [TaxId: 67004]
d3ngfa_ : (ARG114) (PRO150) [view usage] : c.1.15.0 |TIM beta/alpha-barrel |Xylose isomerase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2i5ea1 : (SER142) (THR167) [view usage] : c.68.1.21 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MM2497-like |Hypothetical protein MM2497 |Methanosarcina mazei [TaxId: 2209]
d3fz2c_ : (LYS5) (ALA41) [view usage] : d.323.1.1 |Phage tail protein-like |Phage tail protein-like |Lambda phage gpU-like |automated matches |Enterobacteria phage [TaxId: 10710]
d1y4ob_ : (GLU209) (ASP269) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |Dynein light chain 2A, cytoplasmic |Mouse (Mus musculus) [TaxId: 10090]
d3soza_ : (ALA32) (THR56) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |automated matches |Salmonella enterica [TaxId: 99287]
d3ngfb_ : (ARG114) (PRO150) [view usage] : c.1.15.0 |TIM beta/alpha-barrel |Xylose isomerase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d1vw4e_ : (LYS200) (PHE245) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d3o82b_ : (ASN141) (GLU174) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 557601]
d1v5va2 : (LYS226) (GLY259) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Glycine cleavage system T protein, GcvT |Pyrococcus horikoshii [TaxId: 53953]
d1jhda1 : (SER37) (ALA68) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]
d3l9ka_ : (VAL5) (ASP62) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1h2wa2 : (SER485) (ILE519) [view usage] : c.69.1.4 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Prolyl oligopeptidase, C-terminal domain |Prolyl oligopeptidase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d4oddb_ : (GLU126) (PRO155) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Canis lupus [TaxId: 9615]
d3l7ha_ : (LEU9) (TYR43) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1nyqa1 : (LYS584) (ASN610) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Threonyl-tRNA synthetase (ThrRS), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d3c0ya1 : (GLY546) (SER579) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |Histone deacetylase 7, HDAC7 |Human (Homo sapiens) [TaxId: 9606]
d3csea_ : (LYS159) (LEU177) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 5478]
d2i5eb_ : (SER142) (THR167) [view usage] : c.68.1.21 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MM2497-like |Hypothetical protein MM2497 |Methanosarcina mazei [TaxId: 2209]
d1uaaa1 : (THR83) (THR121) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEXX box DNA helicase |Escherichia coli, RepD [TaxId: 562]
d3u16b_ : (ASN141) (GLU174) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 557601]
d1v8oh_ : (GLN1) (TYR19) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
d1hlup_ : (ASN4) (GLY52) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Cow (Bos taurus) [TaxId: 9913]
d3zqua_ : (PRO58) (GLY91) [view usage] : c.34.1.0 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3qgma_ : (ARG52) (LYS85) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d4h98a_ : (LYS159) (LEU177) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 284593]
d2wvcb2 : (ASN116) (GLU148) [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d3l0ya_ : (LYS84) (VAL102) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o6ga2 : (SER485) (ILE519) [view usage] : c.69.1.4 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Prolyl oligopeptidase, C-terminal domain |Prolyl oligopeptidase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3l7hc_ : (VAL5) (TYR43) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1cfea_ : (SER3) (CYS44) [view usage] : d.111.1.1 |PR-1-like |PR-1-like |PR-1-like |Pathogenesis-related protein 1 (PR1) |Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]
d3l0ca_ : (LYS84) (VAL102) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ghqa_ : (LYS84) (VAL102) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t3na2 : (ASN80) (GLU115) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |DNA polymerase iota |Human (Homo sapiens) [TaxId: 9606]
d2qeta_ : (GLN121) (ILE151) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Phytolacca dioica [TaxId: 29725]
d3kcmd_ : (GLY97) (GLY127) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d3kcmb_ : (LYS98) (GLY127) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2d54a2 : (GLY76) (GLY115) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Thermus thermophilus [TaxId: 274]
d1xx5c1 : (LYS13) (ALA53) [view usage] : d.111.1.1 |PR-1-like |PR-1-like |PR-1-like |automated matches |Chinese cobra (Naja atra) [TaxId: 8656]
d3ovwa_ : (GLU63) (ALA83) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Fungus (Fusarium oxysporum) [TaxId: 5507]
d2v8ca_ : (ALA1) (VAL51) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1fc4a_ : (GLY224) (GLY247) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |2-amino-3-ketobutyrate CoA ligase |Escherichia coli [TaxId: 562]
d1r8wa_ : (VAL609) (THR652) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Glycerol dehydratase DhaB1 |Clostridium butyricum [TaxId: 1492]
d1ovwa_ : (GLU63) (GLY84) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Fungus (Fusarium oxysporum) [TaxId: 5507]
d3fz2d_ : (MSE4) (ALA41) [view usage] : d.323.1.1 |Phage tail protein-like |Phage tail protein-like |Lambda phage gpU-like |automated matches |Enterobacteria phage [TaxId: 10710]
d2k6qa_ : (SER12) (GLN72) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |Microtubule-associated proteins 1A/1B light chain 3B |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3scra_ : (TYR70) (PHE95) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d3fz2e_ : (LYS5) (ALA41) [view usage] : d.323.1.1 |Phage tail protein-like |Phage tail protein-like |Lambda phage gpU-like |automated matches |Enterobacteria phage [TaxId: 10710]
d1nnea3 : (PRO214) (MET250) [view usage] : c.55.6.1 |Ribonuclease H-like motif |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |Thermus aquaticus [TaxId: 271]
d3o83b_ : (ASN141) (GLU174) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 557601]
d3l7hb_ : (SER2) (TYR43) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1no5a_ : (LYS10) (GLY39) [view usage] : d.218.1.5 |Nucleotidyltransferase |Nucleotidyltransferase |Catalytic subunit of bi-partite nucleotidyltransferase |Hypothetical protein HI0073 |Haemophilus influenzae [TaxId: 727]
d1fika_ : (ASN4) (VAL51) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Human (Homo sapiens), isoform I [TaxId: 9606]
d1h65c_ : (ILE232) (ALA263) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Chloroplast protein translocon GTPase Toc34 |Pea (Pisum sativum) [TaxId: 3888]
d1usya_ : (LEU199) (GLU233) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.69, d.58, i.1, c.68, c.108, b.29, c.26, c.42, d.165, c.23, c.37, c.7, d.104, c.47, c.55, b.60, c.71,
b.122, e.23, d.108, d.110, c.154, c.51, d.250, c.120, d.111, c.34, d.15, d.218, c.119, d.323