Tableau information
Concept source: d4wuoa_ amino acid (a.a.) range (GLU55)(ASP98)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU55) (GLU62) H1
(GLU65) (SER71) E2
(ARG85) (ASP98) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -134.2° E2
H3 -36.4° -160.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ezoa_ : (PHE47) (GLY74) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d2aata_ : (LEU209) (HIS247) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Escherichia coli [TaxId: 562]
d1w9xa2 : (GLN345) (GLN394) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus halmapalus [TaxId: 79882]
d1e9sf_ : (SER300) (LEU343) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Bacterial conjugative coupling protein TrwB |Escherichia coli [TaxId: 562]
d3ndca_ : (SER58) (ASN101) [view usage] : c.90.1.0 |Tetrapyrrole methylase |Tetrapyrrole methylase |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 272942]
d3uwpa_ : (SER225) (ALA258) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hvxa2 : (ASP343) (ARG392) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus stearothermophilus [TaxId: 1422]
d1e9sb_ : (SER300) (LEU343) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Bacterial conjugative coupling protein TrwB |Escherichia coli [TaxId: 562]
d1syga_ : (MET98) (LYS136) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1qpga_ : (GLY184) (VAL228) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ehma_ : (PRO20) (THR53) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1r46a2 : (TRP277) (ASP322) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d1dtwb1 : (ASN22) (TYR64) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |Branched-chain alpha-keto acid dehydrogenase, Pyr module |Human (Homo sapiens) [TaxId: 9606]
d4dhea_ : (ALA94) (ALA137) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1uu2b_ : (GLU158) (LYS190) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Thermotoga maritima [TaxId: 2336]
d4lyra_ : (THR325) (SER386) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1htwa_ : (ILE100) (PRO123) [view usage] : c.37.1.18 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |YjeE-like |Hypothetical protein HI0065 |Haemophilus influenzae [TaxId: 727]
d2rksa_ : (VAL99) (LYS136) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1w85b1 : (THR4) (GLY48) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d2h57c_ : (ARG77) (HIS115) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4lx4a_ : (LEU259) (LEU314) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas stutzeri [TaxId: 379731]
d2esda_ : (ILE213) (ALA242) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d1gv4a2 : (LYS285) (SER322) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Apoptosis-inducing factor (AIF) |Mouse (Mus musculus) [TaxId: 10090]
d1clxa_ : (GLY1) (PHE37) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Pseudomonas fluorescens [TaxId: 294]
d3t13a_ : (VAL99) (LYS136) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2jg7a_ : (ILE228) (PHE261) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Acanthopagrus schlegeli [TaxId: 72011]
d2gjpa2 : (GLN345) (GLN394) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus halmapalus [TaxId: 79882]
d2acva_ : (GLN342) (GLY370) [view usage] : c.87.1.10 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDPGT-like |Triterpene UDP-glucosyl transferase UGT71G1 |Medicago truncatula [TaxId: 3880]
d1wekb_ : (HIS52) (GLY92) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
d1ey8a_ : (VAL99) (LYS136) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1q0ub_ : (ILE35) (ALA57) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Probable DEAD box RNA helicase YqfR |Bacillus stearothermophilus [TaxId: 1422]
d1zvka_ : (THR137) (SER184) [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |automated matches |Alicyclobacillus sendaiensis [TaxId: 192387]
d1n25a_ : (LYS400) (CYS443) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d1r30a_ : (ASN269) (GLY309) [view usage] : c.1.28.1 |TIM beta/alpha-barrel |Radical SAM enzymes |Biotin synthase |Biotin synthase |Escherichia coli [TaxId: 562]
d2v4mc_ : (GLY596) (GLN631) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t1ra2 : (GLY80) (GLY116) [view usage] : c.2.1.3 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d1e5na_ : (GLY1) (PHE37) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Pseudomonas fluorescens [TaxId: 294]
d1amya2 : (VAL304) (THR342) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
d3i9v33 : (SER386) (ASP419) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1r30b_ : (ASN269) (GLY309) [view usage] : c.1.28.1 |TIM beta/alpha-barrel |Radical SAM enzymes |Biotin synthase |Biotin synthase |Escherichia coli [TaxId: 562]
d1ltka_ : (PHE187) (LYS229) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2ji6a3 : (ASN376) (ILE410) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Oxalyl-CoA decarboxylase |Oxalobacter formigenes [TaxId: 847]
d1o12a2 : (GLY211) (LYS246) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.81, c.94, c.2, a.118, c.90, c.82, c.66, c.80, c.77, b.40, c.37, c.36, c.86, c.87, c.41, c.3, c.129