Tableau information
Concept source: d3qgmc_ amino acid (a.a.) range (GLY97)(ARG140)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY97) (GLY106) H1
(GLU116) (SER122) E2
(PHE128) (ARG140) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 147.1° E2
H3 43.8° -139.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1e1cb2 : (ALA606) (GLY635) [view usage] : c.23.6.1 |Flavodoxin-like |Cobalamin (vitamin B12)-binding domain |Cobalamin (vitamin B12)-binding domain |Methylmalonyl-CoA mutase beta subunit, C-terminal domain |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d2kg2a_ : (ASN44) (GLY70) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zrra_ : (TYR57) (LEU93) [view usage] : b.82.1.6 |Double-stranded beta-helix |RmlC-like cupins |Acireductone dioxygenase |Acireductone dioxygenase |Klebsiella pneumoniae [TaxId: 573]
d2btwb1 : (THR124) (GLN162) [view usage] : d.3.1.14 |Cysteine proteinases |Cysteine proteinases |Phytochelatin synthase |Primitive phytochelatin synthase |Nostoc sp. PCC 7120 [TaxId: 103690]
d4i2ta_ : (SER2) (LYS37) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Chlorella sorokiniana [TaxId: 3076]
d2zcid1 : (LYS18) (GLY57) [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1iu3c_ : (ASP37) (GLY67) [view usage] : d.228.1.1 |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d3ebmd_ : (ASP71) (GLU105) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Human (Homo sapiens) [TaxId: 9606]
d1djoa_ : (ASN1149) (LYS1183) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase-asparaginase |Pseudomonas sp., 7A [TaxId: 306]
d1zd9a1 : (LEU148) (SER180) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARL8A [TaxId: 9606]
d1gmyb_ : (TYR75) (LYS166) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Human (Homo sapiens) [TaxId: 9606]
d2vdca3 : (LEU83) (ARG125) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Azospirillum brasilense [TaxId: 192]
d1eiwa_ : (PRO83) (ASP109) [view usage] : c.23.3.1 |Flavodoxin-like |Hypothetical protein MTH538 |Hypothetical protein MTH538 |Hypothetical protein MTH538 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1o6jb_ : (ALA38) (PHE62) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d4fkza_ : (PRO191) (GLU229) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |automated matches |Bacillus subtilis [TaxId: 224308]
d3gaga_ : (ASN26) (ALA67) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3ah6c_ : (GLN73) (LEU111) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d1jkya1 : (PRO67) (GLU95) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2ozkc1 : (ILE69) (LEU119) [view usage] : c.66.1.48 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Nsp15 N-terminal domain-like |Nsp15 |SARS coronavirus [TaxId: 227859]
d3ph9b_ : (THR47) (GLN83) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4axja_ : (THR59) (ILE88) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3k8na_ : (ALA62) (GLY97) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Escherichia coli [TaxId: 83333]
d2zcia1 : (LYS18) (GLY57) [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d3kjda2 : (GLY411) (HIS441) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2guya2 : (ASP157) (SER199) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Fungal alpha-amylases |Aspergillus oryzae, Taka-amylase [TaxId: 5062]
d1te2a_ : (ASP199) (LEU221) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |Phosphatase YniC |Escherichia coli [TaxId: 562]
d2dlxa1 : (SER30) (LEU60) [view usage] : c.47.1.24 |Thioredoxin fold |Thioredoxin-like |UAS domain |UBX domain-containing protein 7 |Human (Homo sapiens) [TaxId: 9606]
d1j7na2 : (GLN611) (GLN646) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3srxb_ : (ASN142) (PRO175) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d3e10b_ : (GLU19) (SER60) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 1488]
d2g0fa_ : (ALA62) (GLY97) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Escherichia coli [TaxId: 562]
d1j7nb2 : (GLN611) (GLN646) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2ipna_ : (ASP257) (PHE306) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
d4hl6d_ : (SER61) (LYS92) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1o7ta_ : (ALA76) (THR126) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d1mx1b_ : (ASP2090) (LEU2119) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d2g9da1 : (THR202) (SER246) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |Succinylglutamate desuccinylase AstE |Vibrio cholerae [TaxId: 666]
d1b4qa_ : (GLU3) (LEU35) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Glutaredoxin (Grx, thioltransferase) |Human (Homo sapiens) [TaxId: 9606]
d2g18d_ : (GLU150) (ALA190) [view usage] : d.248.2.1 |Coproporphyrinogen III oxidase |Ferredoxin-dependent bilin reductase |Ferredoxin-dependent bilin reductase |automated matches |Anabaena sp. [TaxId: 1167]
d4fkzb_ : (PRO191) (GLU229) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |automated matches |Bacillus subtilis [TaxId: 224308]
d2uxsa_ : (HIS132) (ALA166) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1w26a3 : (GLY197) (LYS229) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Escherichia coli [TaxId: 562]
d1assa_ : (LYS102) (PRO126) [view usage] : c.8.5.2 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |Group II chaperonin (CCT, TRIC), apical domain |Thermosome, A-domain |Thermoplasma acidophilum, alpha chain [TaxId: 2303]
d1jqjd2 : (GLN40) (ALA70) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1bifa1 : (GLU135) (GLN170) [view usage] : c.37.1.7 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain |6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2b1ka_ : (ALA62) (GLY97) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Escherichia coli [TaxId: 562]
d3mpwa_ : (ALA55) (VAL85) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4txob_ : (THR56) (MET92) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bradyrhizobium diazoefficiens [TaxId: 224911]
d1t11a3 : (GLY197) (LYS229) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Vibrio cholerae [TaxId: 666]
d4i1ia1 : (LEU46) (ASP78) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 347515]
d3e10a_ : (GLU19) (SER60) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 1488]
d1ncja1 : (SER26) (GLN45) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |N-cadherin (neural) |Mouse (Mus musculus) [TaxId: 10090]
d1gmya_ : (TYR75) (GLY168) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Human (Homo sapiens) [TaxId: 9606]
d1jqjc2 : (GLN40) (ALA70) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d2q9ta_ : (THR123) (LYS158) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d3pjda_ : (VAL125) (MET159) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1rf8a_ : (GLU103) (ILE138) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.123, b.82, c.69, c.94, c.2, d.58, c.108, c.56, d.157, c.66, d.92, c.93, c.23, b.40, c.37, c.47, d.166, d.153, d.3,
c.87, d.248, b.1, c.8, c.109, d.90, c.88, b.88, d.26, d.86, b.36, d.228