Tableau information
Concept source: d2id2a_ amino acid (a.a.) range (SER183)(ILE213)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER183) (ALA196) H1
(VAL202) (GLY208) E2
(ARG209) (ILE213) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -162.3° E2
H3 66.7° 113.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ivya_ : (SER43) (GLU82) [view usage] : d.58.58.1 |Ferredoxin-like |TTP0101/SSO1404-like |TTP0101/SSO1404-like |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d3visb_ : (LYS225) (ASN251) [view usage] : c.69.1.16 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Lipase |automated matches |Thermobifida alba [TaxId: 53522]
d1ixia_ : (VAL15) (ASN48) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d2gzoa1 : (ARG109) (ASN145) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypotheical protein SO3346 |Shewanella oneidensis [TaxId: 70863]
d1o6ja_ : (SER89) (ASP121) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d1fvpa_ : (LEU106) (ALA154) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium phosphoreum [TaxId: 659]
d3j39i_ : (SER61) (ALA118) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2bqxa_ : (SER126) (GLN172) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1nmoa_ : (THR199) (ARG220) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d3s6oc_ : (ARG269) (PRO306) [view usage] : c.6.2.6 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |PA1517-like |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1mx9d_ : (VAL4428) (GLY4477) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d1wcfa_ : (LEU116) (THR161) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1vl0a_ : (SER213) (PRO240) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |DTDP-4-dehydrorhamnose reductase RfbD |Clostridium acetobutylicum [TaxId: 1488]
d2a7kh_ : (ALA166) (LEU184) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Carbapenem biosynthes protein CarB |Pectobacterium carotovorum [TaxId: 554]
d1eyia_ : (ALA301) (HIS334) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d4qr0b_ : (THR44) (ARG78) [view usage] : d.58.58.0 |Ferredoxin-like |TTP0101/SSO1404-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d3fn8a2 : (VAL168) (THR206) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d3prvb_ : (THR102) (PHE131) [view usage] : d.58.6.0 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d4a5oa2 : (TYR246) (GLU280) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1quia_ : (VAL15) (ASN48) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d4gwya_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1a40a_ : (PRO14) (ASN48) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d2gk3a1 : (ALA39) (ILE63) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |Putative cytoplasmic protein STM3548 |Salmonella typhimurium [TaxId: 90371]
d1dbda_ : (HIS9) (LYS37) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Bovine papillomavirus type 1 [TaxId: 10559]
d3trra_ : (THR161) (LEU181) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3sc6a_ : (SER216) (GLY243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d3tr4d_ : (SER127) (PHE171) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d1vl0b_ : (SER213) (PRO240) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |DTDP-4-dehydrorhamnose reductase RfbD |Clostridium acetobutylicum [TaxId: 1488]
d2bqya_ : (LYS127) (GLN172) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d2i8ea1 : (SER43) (GLU82) [view usage] : d.58.58.1 |Ferredoxin-like |TTP0101/SSO1404-like |TTP0101/SSO1404-like |Hypothetical protein SSO1404 |Sulfolobus solfataricus [TaxId: 2287]
d1agsa2 : (GLU16) (GLY47) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Human (Homo sapiens), (a1-1) [TaxId: 9606]
d1c7qa_ : (GLY179) (ALA217) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, c.2, c.6, d.58, i.1, c.82, c.80, c.14, c.135, c.23, b.40, c.47, e.7, d.310, d.357