Tableau information
Concept source: d3voaa1 amino acid (a.a.) range (ARG141)(VAL173)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG141) (ALA157) H1
(ASP159) (PRO165) E2
(PRO165) (VAL173) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -160.7° E2
H3 110.9° 50.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1nyoa_ : (VAL58) (LYS78) [view usage] : b.118.1.1 |FAS1 domain |FAS1 domain |FAS1 domain |Immunogenic protein MPT70 |Mycobacterium tuberculosis [TaxId: 1773]
d1wy5a1 : (SER68) (GLU100) [view usage] : c.26.2.5 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |PP-loop ATPase |TilS-like protein Aq_1887 |Aquifex aeolicus [TaxId: 63363]
d1rd5a_ : (PRO4) (ASP30) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Trp synthase alpha-subunit |Maize (Zea mays) [TaxId: 4577]
d2d27a1 : (SER50) (GLY73) [view usage] : d.52.10.1 |Alpha-lytic protease prodomain-like |EspE N-terminal domain-like |GSPII protein E N-terminal domain-like |Type II secretion ATPase XpsE |Xanthomonas campestris [TaxId: 339]
d1np3a2 : (GLY108) (GLY143) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Class I ketol-acid reductoisomerase (KARI) |Pseudomonas aeruginosa [TaxId: 287]
d2v0na3 : (ARG300) (GLY339) [view usage] : d.58.29.2 |Ferredoxin-like |Nucleotide cyclase |GGDEF domain |Response regulator PleD, C-terminal domain |Caulobacter crescentus [TaxId: 155892]
d2rf0a_ : (ASP49) (ALA77) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xhna1 : (GLN75) (GLY103) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Cellular repressor of E1A-stimulated genes CREG1 |Human (Homo sapiens) [TaxId: 9606]
d4bqfb_ : (ALA702) (GLY735) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3fcca_ : (TYR204) (PRO224) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d1sura_ : (PRO83) (ARG115) [view usage] : c.26.2.2 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |PAPS reductase-like |Phosphoadenylyl sulphate (PAPS) reductase |Escherichia coli [TaxId: 562]
d1pgsa2 : (ASN234) (SER271) [view usage] : b.121.1.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Glycosyl-asparaginase |Peptide:N-glycosidase F, PNGase F |Flavobacterium meningosepticum [TaxId: 238]
d3htoa_ : (TYR102) (PRO122) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/wdk/jx/12416/2005(h1n1)) [TaxId: 666057]
d2heka1 : (TYR292) (SER340) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein aq_1910 |Aquifex aeolicus [TaxId: 63363]
d3lrqd_ : (CYS36) (LEU81) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ovja_ : (SER139) (GLY175) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Alicyclobacillus acidocaldarius [TaxId: 521098]
d1kcxa2 : (THR313) (ALA342) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |Dihydropyrimidinase related protein-1 |Mouse (Mus musculus) [TaxId: 10090]
d1ap8a_ : (VAL71) (ALA110) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3lrqb_ : (CYS36) (LEU79) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mrja_ : (GLY231) (ALA247) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d1vkja_ : (LEU199) (ARG226) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |Heparan sulfate 3-O-sulfotransferase |Mouse (Mus musculus) [TaxId: 10090]
d2gtda2 : (GLY218) (GLY248) [view usage] : c.55.1.13 |Ribonuclease H-like motif |Actin-like ATPase domain |CoaX-like |Type III pantothenate kinase, CoaX |Thermotoga maritima [TaxId: 2336]
d2o57a1 : (SER213) (HIS240) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |Putative sarcosine dimethylglycine methyltransferase |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d3glja1 : (LEU62) (ALA88) [view usage] : d.58.3.0 |Ferredoxin-like |Protease propeptides/inhibitors |automated matches |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d3pmsa2 : (ASN234) (SER271) [view usage] : b.121.1.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Glycosyl-asparaginase |automated matches |Elizabethkingia meningoseptica [TaxId: 238]
d1jmia_ : (LEU164) (THR192) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d3lrqa_ : (CYS36) (GLN80) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xhnd_ : (GLN75) (GLY103) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ckda1 : (ALA263) (VAL285) [view usage] : c.66.1.57 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |ML2640-like |Putative methyltransferase ML2640 |Mycobacterium leprae [TaxId: 1769]
d9rubb1 : (ILE143) (GLY170) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rhodospirillum rubrum [TaxId: 1085]
d1peua2 : (TYR331) (GLU360) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1nlia_ : (GLY231) (ALA247) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d2gbsa1 : (MET40) (LYS58) [view usage] : b.122.1.8 |PUA domain-like |PUA domain-like |Atu2648/PH1033-like |Hypothetical protein RPA0253 |Rhodopseudomonas palustris [TaxId: 1076]
d1wjka_ : (SER57) (LYS93) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin-like structure containing protein C330018D20Rik |Mouse (Mus musculus) [TaxId: 10090]
d3lrqc_ : (CYS36) (LEU79) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y88a_ : (SER33) (GLY59) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1jqga2 : (ARG61) (LYS99) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]
d1nsaa2 : (ILE61) (ALA88) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase B |Pig (Sus scrofa) [TaxId: 9823]
d3ipza_ : (CYS97) (GLU123) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ye5b_ : (PRO117) (GLU147) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PH0500 |Pyrococcus horikoshii [TaxId: 53953]
d1y9db3 : (THR453) (THR487) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Lactobacillus plantarum [TaxId: 1590]
d4lh6a_ : (PHE295) (THR323) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.19, c.94, c.2, d.58, c.26, d.117, c.66, d.165, a.211, c.37, c.36, c.7, c.47, c.55, b.121, c.87, c.32, b.122, e.23,
b.45, c.120, d.142, b.34, d.86, d.52, g.44, b.118