Tableau information
Concept source: d4pf6a_ amino acid (a.a.) range (LEU282)(VAL310)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU282) (GLU288) H1
(GLY290) (ALA295) E2
(LEU298) (VAL310) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -135.2° E2
H3 106.9° -66.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (SER51) (GLY80) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d2akja2 : (VAL88) (TYR103) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Ferredoxin--nitrite reductase, NIR |Spinach (Spinacia oleracea) [TaxId: 3562]
d1kohb_ : (ASP237) (ASN263) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d2a9aa2 : (VAL109) (GLU126) [view usage] : d.176.1.1 |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Sulfite oxidase, middle catalytic domain |Chicken (Gallus gallus) [TaxId: 9031]
d1zl3a2 : (SER104) (GLY143) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Escherichia coli [TaxId: 562]
d4myna_ : (LEU10) (GLY39) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |automated matches |Trypanosoma cruzi [TaxId: 469008]
d1orta1 : (VAL65) (LYS87) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Pseudomonas aeruginosa [TaxId: 287]
d1c9ub_ : (GLY264) (LYS288) [view usage] : b.68.2.1 |6-bladed beta-propeller |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Acinetobacter calcoaceticus [TaxId: 471]
d2f0ra_ : (ASP104) (TRP117) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1s1qc_ : (ASP104) (TRP117) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1na6b1 : (SER4) (GLY31) [view usage] : b.142.1.1 |DNA-binding pseudobarrel domain |DNA-binding pseudobarrel domain |Type II restriction endonuclease effector domain |Restriction endonuclease EcoRII, N-terminal domain |Escherichia coli [TaxId: 562]
d3gaga_ : (PRO70) (ASP89) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3f4wa_ : (GLY136) (VAL156) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d3ej8a_ : (LEU409) (SER453) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cdoa2 : (PRO305) (LYS338) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |Alcohol dehydrogenase |Cod (Gadus callarias) [TaxId: 8053]
d2rkba_ : (TRP120) (ALA152) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bs0a_ : (GLY218) (GLY239) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) |Escherichia coli [TaxId: 562]
d1zi7b_ : (ASP406) (GLU429) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1q85a2 : (ARG5) (GLY30) [view usage] : c.1.26.1 |TIM beta/alpha-barrel |Homocysteine S-methyltransferase |Homocysteine S-methyltransferase |Cobalamin-dependent methionine synthase MetH, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d3l20a_ : (LYS17) (GLY46) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Staphylococcus aureus [TaxId: 367830]
d1zhwa_ : (ASP406) (GLU429) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ffuc2 : (GLY34) (GLY62) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1s1qa_ : (ASP104) (TRP117) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1gtma1 : (THR323) (ALA345) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Pyrococcus furiosus [TaxId: 2261]
d2wm8a_ : (GLY-7) (TRP18) [view usage] : c.108.1.17 |HAD-like |HAD-like |Magnesium-dependent phosphatase-1, Mdp1 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j7db_ : (ASP81) (TRP95) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc13 [TaxId: 9606]
d2prvb_ : (MSE1) (GLN36) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein YobK |Bacillus subtilis [TaxId: 1423]
d2b3jc_ : (GLN119) (LYS152) [view usage] : c.97.1.2 |Cytidine deaminase-like |Cytidine deaminase-like |Deoxycytidylate deaminase-like |tRNA adenosine deaminase TadA |Staphylococcus aureus [TaxId: 1280]
d3mm1a_ : (ALA52) (GLY80) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d3rjya_ : (SER35) (ALA55) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Fervidobacterium nodosum [TaxId: 381764]
d3a2ba_ : (GLY224) (ALA247) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Sphingobacterium multivorum [TaxId: 28454]
d1pc3a_ : (LEU326) (THR348) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Mycobacterium tuberculosis [TaxId: 1773]
d3p83d_ : (SER42) (ARG72) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3sc6c_ : (ASN257) (THR281) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d3dj1a_ : (THR89) (LEU123) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4ir8b_ : (SER112) (GLY134) [view usage] : e.7.1.0 |Carbohydrate phosphatase |Carbohydrate phosphatase |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
d2ocga_ : (PHE60) (ASP89) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ocla_ : (PHE60) (ASP89) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ff2b_ : (PRO191) (PRO217) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
d3b9gb_ : (PRO191) (VAL216) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
d1xdoa3 : (ASN461) (GLU492) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Escherichia coli [TaxId: 562]
d3a9va_ : (LYS136) (ALA165) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Populus tomentosa [TaxId: 118781]
d3ptfb_ : (ASN79) (ARG90) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fxba_ : (GLU253) (SER275) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Silicibacter pomeroyi [TaxId: 246200]
d1ixga_ : (ALA285) (ILE312) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d2b3ja1 : (GLN119) (ASN151) [view usage] : c.97.1.2 |Cytidine deaminase-like |Cytidine deaminase-like |Deoxycytidylate deaminase-like |tRNA adenosine deaminase TadA |Staphylococcus aureus [TaxId: 1280]
d2b3jd_ : (GLN119) (ASN151) [view usage] : c.97.1.2 |Cytidine deaminase-like |Cytidine deaminase-like |Deoxycytidylate deaminase-like |tRNA adenosine deaminase TadA |Staphylococcus aureus [TaxId: 1280]
d4f4ra2 : (GLU170) (HIS190) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d1edza1 : (SER281) (LYS318) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Methylenetetrahydrofolate dehydrogenase/cyclohydrolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1a54a_ : (ALA285) (THR310) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
d1p5ja_ : (LEU113) (ALA146) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Human (Homo sapiens) [TaxId: 9606]
d3nglc2 : (PHE236) (ASN275) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, c.10, c.67, c.69, c.94, c.2, d.58, c.108, c.79, c.42, c.55, d.174, d.32, e.7, e.23, d.176, c.78, c.97, d.20,
d.90, d.145, d.136, b.36, c.70, d.265, d.338, d.369, b.142