Tableau information
Concept source: d1r1na_ amino acid (a.a.) range (GLU155)(GLY185)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU155) (TYR168) H1
(TYR168) (LYS174) E2
(LYS174) (GLY185) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -89.4° E2
H3 51.5° 123.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fxwa_ : (PHE62) (ASN86) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha1 [TaxId: 9913]
d1y1oa_ : (LYS169) (PHE198) [view usage] : c.52.1.28 |Restriction endonuclease-like |Restriction endonuclease-like |RecU-like |Recombination protein U (RecU)/PBP related factor A (PrfA) |Bacillus stearothermophilus [TaxId: 1422]
d4fioc_ : (ASP201) (GLY236) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1ru3a_ : (SER535) (ASN577) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Monomeric acetyl-CoA synthase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d3m9yb_ : (SER157) (THR176) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Staphylococcus aureus [TaxId: 282458]
d1etha2 : (ARG266) (ALA294) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d4fiob_ : (ASP201) (GLY236) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1m64a3 : (ASP433) (MET453) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Flavocytochrome c3 (respiratory fumarate reductase) |Shewanella frigidimarina [TaxId: 56812]
d2vx4a_ : (THR62) (THR107) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
d1lpab2 : (ALA260) (ALA293) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4kdza_ : (PRO107) (GLY149) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |automated matches |Escherichia coli [TaxId: 364106]
d1dt2a_ : (GLY110) (ILE133) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Exfoliative toxin B |Staphylococcus aureus [TaxId: 1280]
d2gnnd_ : (GLY16) (HIS39) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Orf virus [TaxId: 10259]
d1e10a_ : (ASP22) (GLY56) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Halobacterium halobium [TaxId: 2242]
d2d6fc2 : (SER289) (VAL312) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2cfoa1 : (ASP80) (LYS115) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d1grua_ : (TYR360) (GLU408) [view usage] : i.16.1.1 |GroE chaperon |GroE chaperon |GroE chaperon |GroE chaperon |Escherichia coli [TaxId: 562]
d2pi2f_ : (VAL2) (ILE21) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q6xa1 : (LEU102) (HIS144) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gnnb_ : (TRP17) (HIS39) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Orf virus [TaxId: 10259]
d4jaka_ : (PRO107) (GLY149) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4fioa_ : (ASP201) (GLY236) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d2hiyd_ : (VAL157) (LYS180) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3txya_ : (ILE172) (THR191) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2hr9a_ : (VAL70) (GLN106) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Human (Homo sapiens) [TaxId: 9606]
d1kssa3 : (ASP433) (GLU454) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Flavocytochrome c3 (respiratory fumarate reductase) |Shewanella frigidimarina [TaxId: 56812]
d1j85a_ : (PRO107) (GLY149) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) |Haemophilus influenzae [TaxId: 727]
d1o7ta_ : (PRO279) (GLY307) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d2b7ra3 : (ASP433) (MET453) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Flavocytochrome c3 (respiratory fumarate reductase) |Shewanella frigidimarina [TaxId: 56812]
d2g39a1 : (SER92) (ASN119) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d2x2ya1 : (THR14) (VAL59) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Cellulomonas fimi [TaxId: 1708]
d2p84a1 : (ILE110) (PRO126) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Orf041 product |Staphylococcus phage 37 [TaxId: 320840]
d2bvta2 : (THR14) (VAL59) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Mannanase A, ManA |Cellulomonas fimi [TaxId: 1708]
d1k2vn_ : (MET258) (ALA291) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d2pgcb_ : (GLY50) (LYS77) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d1efdn_ : (MET258) (ALA291) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d2oqtc_ : (LEU3) (LYS37) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d1t1ua1 : (LEU102) (HIS144) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3tb4a_ : (SER177) (ALA207) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d3u1ua_ : (LEU355) (TRP372) [view usage] : b.34.21.1 |SH3-like barrel |Plus3-like |Plus3 |RNA polymerase-associated protein RTF1 homolog |Human (Homo sapiens) [TaxId: 9606]
d2c9wa2 : (GLN32) (LEU62) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Suppressor of cytokine signaling 2, SOCS-2 |Human (Homo sapiens) [TaxId: 9606]
d1yzhb_ : (GLY8) (GLY36) [view usage] : c.66.1.53 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TrmB-like |tRNA (guanine-N(7)-)-methyltransferase TrmB |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1q9jb2 : (ALA277) (GLY318) [view usage] : c.43.1.2 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |NRPS condensation domain (amide synthase) |Polyketide synthase associated protein 5, PapA5 |Mycobacterium tuberculosis [TaxId: 1773]
d1mjgm_ : (SER532) (ASN576) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d1esza_ : (MET258) (ALA291) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d1yzha1 : (GLY8) (GLY36) [view usage] : c.66.1.53 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TrmB-like |tRNA (guanine-N(7)-)-methyltransferase TrmB |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3tg2a_ : (SER177) (ALA206) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1afwb1 : (LYS25) (ASN58) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Thiolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2oqtb_ : (LEU3) (LYS37) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d2pgca1 : (GLY50) (LYS77) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d2hiyb_ : (VAL157) (LYS179) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2hiyc_ : (VAL157) (LYS179) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3gfva_ : (VAL258) (GLU296) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2g39b1 : (SER92) (ASN119) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, d.58, c.26, b.47, c.92, c.66, c.124, c.23, b.40, c.95, c.43, c.116, c.33, i.16, c.52, b.34, d.168, e.26,
d.15, b.88, d.74, d.93, g.17, d.112, d.356, b.172, d.147