Tableau information
Concept source: d3vc3f_ amino acid (a.a.) range (PRO256)(GLY312)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO256) (GLY264) H1
(LYS291) (SER296) E2
(SER296) (GLY312) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -156.3° E2
H3 118.8° 84.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1x37a_ : (GLU5) (TYR45) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3i54b2 : (VAL146) (VAL184) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2pqmb_ : (PRO218) (GLY274) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d4pfya_ : (GLY252) (LEU273) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d3iwzc2 : (VAL160) (LEU196) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d1bd3a_ : (GLN21) (ASP54) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d1oc9b_ : (MET16) (ALA43) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d1jila_ : (ASN3) (LYS30) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Staphylococcus aureus [TaxId: 1280]
d1vbma_ : (LEU6) (GLN31) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Escherichia coli [TaxId: 562]
d1oe5a_ : (ASP40) (CYS84) [view usage] : c.18.1.3 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3zfzb3 : (PHE479) (ASN510) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Staphylococcus aureus [TaxId: 158878]
d2a6ab1 : (LEU67) (SER100) [view usage] : c.55.1.9 |Ribonuclease H-like motif |Actin-like ATPase domain |YeaZ-like |Hypothetical protein TM0874 |Thermotoga maritima [TaxId: 2336]
d4fe3a_ : (HIS9) (GLY40) [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2d5ya_ : (THR366) (LEU409) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Escherichia coli [TaxId: 562]
d1sxjc2 : (PRO170) (SER201) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rqxc_ : (ASP291) (SER332) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Pseudomonas sp., strain ACP [TaxId: 306]
d1qviz_ : (ALA84) (LEU113) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Regulatory Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
d1xxha2 : (GLU143) (CYS173) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1jlra_ : (GLU22) (ILE52) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d4ahca1 : (HIS89) (GLY125) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1jqjd2 : (GLU143) (CYS173) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1oidb1 : (LEU496) (SER533) [view usage] : d.114.1.1 |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |Escherichia coli [TaxId: 562]
d2csva1 : (CYS40) (GLU64) [view usage] : g.43.1.1 |B-box zinc-binding domain |B-box zinc-binding domain |B-box zinc-binding domain |Tripartite motif-containing protein 29 |Human (Homo sapiens) [TaxId: 9606]
d2pqma_ : (PRO218) (GLY274) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d1jlsc_ : (GLU22) (ARG53) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d2hfha_ : (SER7) (ARG36) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |Genesis |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2osda1 : (ASN67) (LEU92) [view usage] : d.278.1.3 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |MJ1460-like |Hypothetical protein MJ1460 |Methanococcus jannaschii [TaxId: 2190]
d1acia_ : (ALA10) (LYS47) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1oi8a1 : (LEU496) (SER533) [view usage] : d.114.1.1 |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.67, c.94, c.108, c.79, c.26, c.37, c.18, c.47, c.55, d.278, c.61, a.4, a.39, g.43, d.114