Tableau information
Concept source: d1gqyb3 amino acid (a.a.) range (ARG107)(LYS144)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG107) (ARG118) H1
(GLY120) (THR126) E2
(GLY128) (LYS144) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -141.1° E2
H3 26.4° 153.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3tmke_ : (VAL154) (THR206) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Thymidylate kinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3tv5c1 : (GLY1779) (SER1808) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4hv4a2 : (ARG108) (GLY145) [view usage] : c.72.2.0 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d3b6ra2 : (VAL325) (GLU368) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s7ga_ : (THR221) (SER251) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF0112, Sir2 homolog (Sir2-AF2) |Archaeoglobus fulgidus [TaxId: 2234]
d1m2ga_ : (THR215) (LYS247) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF1676, Sir2 homolog (Sir2-AF1?) |Archaeoglobus fulgidus [TaxId: 2234]
d4ttpa_ : (GLU169) (ILE205) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d2ajta1 : (LEU459) (PHE498) [view usage] : b.43.2.2 |Reductase/isomerase/elongation factor common domain |FucI/AraA C-terminal domain-like |AraA C-terminal domain-like |L-arabinose isomerase AraA |Escherichia coli [TaxId: 562]
d2hoqa_ : (SER200) (GLU227) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d3c66b3 : (ASP353) (LEU396) [view usage] : d.58.16.1 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Poly(A) polymerase, PAP, C-terminal domain |Poly(A) polymerase, PAP, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sbzd_ : (SER127) (GLY174) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Probable aromatic acid decarboxylase Pad1 |Escherichia coli O157:H7 [TaxId: 83334]
d3tmka_ : (VAL154) (THR206) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Thymidylate kinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ko7a1 : (PRO93) (GLU128) [view usage] : c.98.2.1 |MurF and HprK N-domain-like |HprK N-terminal domain-like |HPr kinase/phoshatase HprK N-terminal domain |HPr kinase/phoshatase HprK N-terminal domain |Staphylococcus xylosus [TaxId: 1288]
d4u6na_ : (GLY148) (PRO192) [view usage] : c.80.1.3 |SIS domain |SIS domain |mono-SIS domain |automated matches |Escherichia coli [TaxId: 83333]
d1rnia_ : (GLU42) (HIS77) [view usage] : d.264.1.2 |Prim-pol domain |Prim-pol domain |Bifunctional DNA primase/polymerase N-terminal domain |Bifunctional DNA primase/polymerase N-terminal domain |Sulfolobus islandicus [TaxId: 43080]
d1icia_ : (THR215) (LEU244) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF1676, Sir2 homolog (Sir2-AF1?) |Archaeoglobus fulgidus [TaxId: 2234]
d4kaxa_ : (GLY140) (SER171) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARF1 [TaxId: 9606]
d1x92b_ : (GLY151) (GLY194) [view usage] : c.80.1.3 |SIS domain |SIS domain |mono-SIS domain |Phosphoheptose isomerase GmhA1 |Pseudomonas aeruginosa [TaxId: 287]
d1xk9a_ : (THR418) (GLY454) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3h0sa1 : (GLY1779) (SER1808) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1pixa2 : (VAL254) (LEU285) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Glutaconyl-CoA decarboxylase A subunit |Acidaminococcus fermentans [TaxId: 905]
d1ufoa_ : (LEU198) (ALA237) [view usage] : c.69.1.27 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Hypothetical protein TT1662 |Hypothetical protein TT1662 |Thermus thermophilus [TaxId: 274]
d1x0ua1 : (GLY222) (LEU254) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2kbfa_ : (ASP442) (LEU480) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ff6a1 : (GLY1982) (SER2011) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ro0a_ : (GLU42) (HIS77) [view usage] : d.264.1.2 |Prim-pol domain |Prim-pol domain |Bifunctional DNA primase/polymerase N-terminal domain |Bifunctional DNA primase/polymerase N-terminal domain |Sulfolobus islandicus [TaxId: 43080]
d1uytc1 : (GLY1779) (SER1808) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2p90b_ : (SER178) (SER224) [view usage] : c.56.8.1 |Phosphorylase/hydrolase-like |Cgl1923-like |Cgl1923-like |Hypothetical protein Cgl1923 |Corynebacterium glutamicum [TaxId: 1718]
d3tmkd_ : (VAL154) (THR206) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Thymidylate kinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2iywa_ : (ARG125) (LEU166) [view usage] : c.37.1.2 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Shikimate kinase (AroK) |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1znwa_ : (ALA176) (LEU200) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3bwka_ : (TYR93) (TYR151) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1laue_ : (GLY189) (SER236) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Herpes simplex virus type 1 [TaxId: 10298]
d1yc2e_ : (THR221) (LEU249) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF0112, Sir2 homolog (Sir2-AF2) |Archaeoglobus fulgidus [TaxId: 2234]
d1m2ha_ : (THR215) (LYS247) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF1676, Sir2 homolog (Sir2-AF1?) |Archaeoglobus fulgidus [TaxId: 2234]
d3mvkc_ : (PRO10) (LYS40) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Bifidobacterium longum [TaxId: 391904]
d3e4da_ : (TRP233) (LEU276) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1uw5a_ : (ASN176) (LEU232) [view usage] : d.129.3.4 |TBP-like |Bet v1-like |Phoshatidylinositol transfer protein, PITP |Phoshatidylinositol transfer protein, PITP |Human (Homo sapiens) [TaxId: 9606]
d2x24b1 : (GLY307) (SER336) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1jkjb1 : (ASN353) (GLU386) [view usage] : c.23.4.1 |Flavodoxin-like |Succinyl-CoA synthetase domains |Succinyl-CoA synthetase domains |Succinyl-CoA synthetase, beta-chain, C-terminal domain |Escherichia coli [TaxId: 562]
d1m2ja_ : (THR215) (LYS247) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF1676, Sir2 homolog (Sir2-AF1?) |Archaeoglobus fulgidus [TaxId: 2234]
d3vpda2 : (LYS89) (GLY123) [view usage] : d.142.1.7 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Lysine biosynthesis enzyme LysX ATP-binding domain |automated matches |Thermus thermophilus [TaxId: 274]
d4h17a_ : (GLU46) (GLN86) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d3mvka_ : (PRO10) (LYS40) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Bifidobacterium longum [TaxId: 391904]
d1viaa_ : (ASP123) (ILE164) [view usage] : c.37.1.2 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Shikimate kinase (AroK) |Shikimate kinase (AroK) |Campylobacter jejuni [TaxId: 197]
d7pcka_ : (MET68) (ARG127) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d3tr7a_ : (GLY167) (GLY216) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |automated matches |Coxiella burnetii [TaxId: 777]
d4f2da2 : (LEU459) (TYR495) [view usage] : b.43.2.0 |Reductase/isomerase/elongation factor common domain |FucI/AraA C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1j6ua3 : (ARG89) (ARG128) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Thermotoga maritima [TaxId: 2336]
d1m3ua_ : (ILE6) (GLY37) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |Ketopantoate hydroxymethyltransferase PanB |Escherichia coli [TaxId: 562]
d3kqfb_ : (SER171) (ASN204) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4fn4a_ : (ARG53) (SER84) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sulfolobus acidocaldarius [TaxId: 330779]
d1eucb2 : (GLN4) (LEU38) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d4qa0b_ : (PHE207) (ALA254) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pqna_ : (ASN10) (TYR46) [view usage] : c.47.1.8 |Thioredoxin fold |Thioredoxin-like |spliceosomal protein U5-15Kd |spliceosomal protein U5-15Kd |Human (Homo sapiens) [TaxId: 9606]
d1p31a3 : (ARG107) (LYS144) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d3qb4b_ : (GLY82) (TYR110) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |BMP receptor Ia ectodomain |Human (Homo sapiens) [TaxId: 9606]
d1cqib2 : (HIS4) (GLY39) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d1yc2d_ : (THR221) (GLU252) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF0112, Sir2 homolog (Sir2-AF2) |Archaeoglobus fulgidus [TaxId: 2234]
d1gqyb3 : (ARG107) (LYS144) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d3tv5a1 : (GLY1779) (SER1808) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1ou0a_ : (PHE165) (LEU206) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d2afio_ : (GLY113) (MET137) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3vavh_ : (THR13) (ASN45) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |automated matches |Burkholderia thailandensis [TaxId: 271848]
d3tz3c1 : (GLY1779) (SER1808) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3kwby_ : (MET2068) (GLY2129) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d2goob_ : (SER83) (TYR110) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |BMP receptor Ia ectodomain |Human (Homo sapiens) [TaxId: 9606]
d1rpxa_ : (SER1) (GLY36) [view usage] : c.1.2.2 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |D-ribulose-5-phosphate 3-epimerase |D-ribulose-5-phosphate 3-epimerase |Potato (Solanum tuberosum) [TaxId: 4113]
d1jllb2 : (HIS4) (GLY39) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d1m2na_ : (THR215) (LEU244) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF1676, Sir2 homolog (Sir2-AF1?) |Archaeoglobus fulgidus [TaxId: 2234]
d1m2ka_ : (THR215) (LYS247) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF1676, Sir2 homolog (Sir2-AF1?) |Archaeoglobus fulgidus [TaxId: 2234]
d1qwua3 : (VAL355) (ALA392) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1od2b1 : (GLY1779) (SER1808) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1t27a_ : (ASN177) (LEU233) [view usage] : d.129.3.4 |TBP-like |Bet v1-like |Phoshatidylinositol transfer protein, PITP |Phoshatidylinositol transfer protein, PITP |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fp4b2 : (GLU5) (ASN39) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2wcvb_ : (SER10) (GLY39) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3mvkg_ : (PRO10) (LYS40) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Bifidobacterium longum [TaxId: 391904]
d4lh6a_ : (THR239) (LYS277) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1atka_ : (MET68) (GLY129) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.2, c.6, d.58, c.108, c.56, c.80, c.14, c.42, d.129, c.72, c.23, c.37, c.18, c.47, d.166, d.3, c.31, c.33,
c.133, d.142, d.128, c.34, b.43, c.98, d.264, g.7