Tableau information
Concept source: d1dbya_ amino acid (a.a.) range (ASP8)(ILE37)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP8) (SER18) H1
(VAL20) (PHE26) E2
(CYS31) (ILE37) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -143.8° E2
H3 54.3° -139.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (GLY13) (GLU47) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d2aifa1 : (SER20) (GLY54) [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Cryptosporidium parvum [TaxId: 5807]
d1a9xa5 : (ARG129) (VAL162) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains |Escherichia coli [TaxId: 562]
d4a17v_ : (ALA119) (GLY149) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4gwza_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d4aoua_ : (LYS371) (MET401) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2b4va2 : (PRO259) (ASN287) [view usage] : d.218.1.10 |Nucleotidyltransferase |Nucleotidyltransferase |RNA editing terminal uridyl transferase 2, RET2, catalytic domain |RNA editing terminal uridyl transferase 2, TUTase 2, RET2 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1p52a2 : (THR141) (HIS185) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d1uj2a_ : (VAL189) (GLY231) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Uridine-cytidine kinase 2 |Human (Homo sapiens) [TaxId: 9606]
d1cnqa_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d2jaoa_ : (CYS167) (SER199) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4i1ua_ : (THR161) (HIS202) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Burkholderia vietnamiensis [TaxId: 269482]
d4l6aa_ : (ALA196) (SER224) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2f3da_ : (ALA301) (LYS337) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1paex_ : (SER107) (TRP137) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1yyza_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d2zuab_ : (THR103) (LEU134) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Haloarcula quadrata [TaxId: 182779]
d1yxia_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1bg0a2 : (THR141) (HIS185) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d4g63a_ : (SER101) (ASN146) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d1b6sb3 : (ASP79) (ARG112) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 |Escherichia coli [TaxId: 562]
d1frva_ : (LEU35) (GLY66) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |Nickel-iron hydrogenase, small subunit |Desulfovibrio gigas [TaxId: 879]
d3exwa_ : (SER179) (MET236) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus 7 [TaxId: 10519]
d3vrda1 : (THR3) (SER46) [view usage] : a.3.1.4 |Cytochrome c |Cytochrome c |Two-domain cytochrome c |automated matches |Thermochromatium tepidum [TaxId: 1050]
d2f3ba_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d2jawa_ : (ALA196) (SER224) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gx3a_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d3u5ef_ : (THR120) (GLY152) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2b51a1 : (PRO259) (GLY288) [view usage] : d.218.1.10 |Nucleotidyltransferase |Nucleotidyltransferase |RNA editing terminal uridyl transferase 2, RET2, catalytic domain |RNA editing terminal uridyl transferase 2, TUTase 2, RET2 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1jdbb5 : (ARG128) (ASP160) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains |Escherichia coli [TaxId: 562]
d4fu0a2 : (ASP139) (ALA174) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1mh9a_ : (ALA196) (SER224) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |5'(3')-deoxyribonucleotidase (dNT-2) |Human (Homo sapiens) [TaxId: 9606]
d2k8va_ : (LEU28) (LYS58) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1y8ba_ : (SER107) (ALA130) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d3f0ya_ : (SER179) (MET236) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |automated matches |Human adenovirus 14 [TaxId: 10521]
d1z4ia1 : (ALA196) (SER224) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |5'(3')-deoxyribonucleotidase (dNT-2) |Human (Homo sapiens) [TaxId: 9606]
d3f0oa2 : (VAL168) (MET207) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d4a34i_ : (SER10) (ALA39) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1byma_ : (ARG151) (ALA185) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d3mm1a_ : (GLY13) (GLU47) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d2dgkc_ : (LEU392) (ILE418) [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
d1ddlc_ : (GLN106) (PRO127) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
d1bmv11 : (ILE1056) (TRP1087) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d2qvua_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d4o6od_ : (ASP144) (ARG193) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d2az1a1 : (THR104) (PHE136) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Halobacterium salinarum [TaxId: 2242]
d4ax4a2 : (SER485) (ILE519) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d4mwoa_ : (ALA196) (SER224) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ocea_ : (LYS41) (GLU70) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |automated matches |Proteus mirabilis [TaxId: 529507]
d3f0yg_ : (SER179) (MET236) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |automated matches |Human adenovirus 14 [TaxId: 10521]
d1x52a1 : (ASP15) (MET53) [view usage] : d.79.3.2 |Bacillus chorismate mutase-like |L30e-like |ERF1/Dom34 C-terminal domain-like |Cell division protein pelota |Human (Homo sapiens) [TaxId: 9606]
d1s57a_ : (THR182) (TRP212) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]
d3d1ja_ : (PRO27) (VAL51) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4anea_ : (THR102) (TRP132) [view usage] : d.58.6.0 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1vkza3 : (SER94) (PHE128) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 |Thermotoga maritima [TaxId: 2336]
d4h45a_ : (ALA301) (ALA335) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d3lp8a2 : (SER102) (HIS136) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d1khha_ : (GLU117) (THR145) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2hbba1 : (PHE29) (LYS51) [view usage] : d.100.1.1 |MbtH/L9 domain-like |L9 N-domain-like |Ribosomal protein L9 N-domain |Ribosomal protein L9 N-domain |Bacillus stearothermophilus [TaxId: 1422]
d1q92a_ : (ALA196) (SER224) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |5'(3')-deoxyribonucleotidase (dNT-2) |Human (Homo sapiens) [TaxId: 9606]
d4au9a_ : (GLY11) (ILE43) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Auricularia auricula-judae [TaxId: 29892]
d4i1va_ : (THR161) (HIS202) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Burkholderia vietnamiensis [TaxId: 269482]
d4om7a_ : (LYS657) (SER695) [view usage] : c.23.2.1 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |Toll/Interleukin receptor TIR domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gpba_ : (SER314) (ILE346) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3mjfa2 : (SER104) (LYS138) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |automated matches |Yersinia pestis [TaxId: 214092]
d2yw2a2 : (SER102) (VAL136) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3r23a1 : (ASP94) (LYS128) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d1wgba_ : (SER54) (ASP81) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d1yoaa1 : (SER54) (ASP81) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d1gsaa2 : (LYS125) (HIS154) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |Prokaryotic glutathione synthetase, C-domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.58, i.1, c.108, c.66, c.77, c.23, c.37, c.47, b.121, c.87, e.7, b.45, b.21, c.133, d.79, d.142, b.34,
d.128, a.3, e.19, d.218, e.49, d.357, d.100