Tableau information
Concept source: d4e76a_ amino acid (a.a.) range (SER196)(VAL228)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER196) (ALA209) H1
(ASP213) (CYS223) E2
(CYS223) (VAL228) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 132.9° E2
H3 71.1° 78.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1rjja_ : (PRO77) (SER106) [view usage] : d.58.4.4 |Ferredoxin-like |Dimeric alpha+beta barrel |Plant stress-induced protein |Hypothetical protein AT5G22580 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3vqsb_ : (SER196) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1f3va_ : (GLY93) (ALA141) [view usage] : d.58.22.1 |Ferredoxin-like |TRADD, N-terminal domain |TRADD, N-terminal domain |TRADD, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2whoa_ : (SER196) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 11103]
d3o08a2 : (HIS448) (GLY477) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1cj5a_ : (ASP137) (GLN159) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1qhta1 : (ASP98) (GLY125) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Thermococcus sp., 9on-7 [TaxId: 35749]
d1iw7c_ : (ILE44) (LYS86) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1yt8a1 : (ASN113) (ARG144) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Thiosulfate sulfurtransferase PA2603 |Pseudomonas aeruginosa [TaxId: 287]
d1sbzd_ : (SER50) (ASP66) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Probable aromatic acid decarboxylase Pad1 |Escherichia coli O157:H7 [TaxId: 83334]
d3boja_ : (THR15) (LEU39) [view usage] : c.154.1.1 |CdCA1 repeat-like |CdCA1 repeat-like |CdCA1 repeat-like |Cadmium-specific carbonic anhydrase CdCA1 |Thalassiosira weissflogii [TaxId: 67004]
d1nb4a_ : (SER196) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 11103]
d2c5wb1 : (GLY542) (GLU569) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1a, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4k8za1 : (ARG97) (GLY125) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d2qtgb_ : (SER184) (LEU213) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3mdqa2 : (VAL272) (GLY309) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
d1waca_ : (THR306) (TRP332) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d3boba1 : (SER225) (ALA249) [view usage] : c.154.1.1 |CdCA1 repeat-like |CdCA1 repeat-like |CdCA1 repeat-like |Cadmium-specific carbonic anhydrase CdCA1 |Thalassiosira weissflogii [TaxId: 67004]
d3uk8b_ : (THR435) (SER459) [view usage] : c.154.1.1 |CdCA1 repeat-like |CdCA1 repeat-like |CdCA1 repeat-like |Cadmium-specific carbonic anhydrase CdCA1 |Thalassiosira weissflogii [TaxId: 67004]
d2kwba_ : (ASP69) (ALA85) [view usage] : b.88.1.0 |Mss4-like |Mss4-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1v71a1 : (ASN244) (LYS277) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1kqfb1 : (THR188) (HIS238) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Formate dehydrogenase N, iron-sulfur (beta) subunit |Escherichia coli [TaxId: 562]
d2h8gb_ : (SER184) (LEU213) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1wdea_ : (SER46) (SER74) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Aeropyrum pernix [TaxId: 56636]
d2fvca_ : (SER196) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 11103]
d1t6ca2 : (PHE278) (ASN310) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |Exopolyphosphatase Ppx |Aquifex aeolicus [TaxId: 63363]
d1hi8a_ : (THR306) (TRP332) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d1hi8a_ : (ALA639) (VAL661) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d2r1ca1 : (GLU66) (PRO94) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Thermus thermophilus [TaxId: 274]
d1e1eb_ : (ASN246) (ILE284) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d2vhla2 : (SER207) (MET228) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Bacillus subtilis [TaxId: 1423]
d1tgoa1 : (ARG97) (GLY125) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Thermococcus gorgonarius [TaxId: 71997]
d1pnfa2 : (ILE236) (SER271) [view usage] : b.121.1.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Glycosyl-asparaginase |Peptide:N-glycosidase F, PNGase F |Flavobacterium meningosepticum [TaxId: 238]
d4flqa1 : (SER95) (GLY110) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d1e5ta2 : (SER485) (ILE519) [view usage] : c.69.1.4 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Prolyl oligopeptidase, C-terminal domain |Prolyl oligopeptidase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2j4ra2 : (ILE271) (SER304) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |automated matches |Aquifex aeolicus [TaxId: 63363]
d1r8wa_ : (TYR754) (ARG782) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Glycerol dehydratase DhaB1 |Clostridium butyricum [TaxId: 1492]
d2izze1 : (LEU108) (VAL128) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lqla_ : (GLY40) (GLY86) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Hypothetical protein MPN625 |Mycoplasma pneumoniae [TaxId: 2104]
d1sbzb_ : (SER50) (ASP66) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Probable aromatic acid decarboxylase Pad1 |Escherichia coli O157:H7 [TaxId: 83334]
d1o5wa2 : (HIS365) (GLY404) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |Monoamine oxidase B |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wnsa1 : (ARG97) (GLY125) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Pyrococcus kodakaraensis [TaxId: 311400]
d1hxha_ : (SER231) (LEU253) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |3beta/17beta hydroxysteroid dehydrogenase |Comamonas testosteroni [TaxId: 285]
d3bsfa_ : (SER171) (LYS201) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1klva_ : (ILE64) (TYR95) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |GABA(A) receptor associated protein GABARAP |Human (Homo sapiens) [TaxId: 9606]
d3gnwb_ : (PRO197) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis c virus isolate [TaxId: 420174]
d3frza_ : (SER196) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 11103]
d2j4ra1 : (ASN95) (LYS132) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |automated matches |Aquifex aeolicus [TaxId: 63363]
d1o12a2 : (THR180) (LEU202) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Thermotoga maritima [TaxId: 2336]
d1arol_ : (THR1096) (ALA1126) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Bacteriophage T7 lysozyme (Zn amidase) |Bacteriophage T7 [TaxId: 10760]
d3co9a_ : (SER196) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus isolate bk [TaxId: 11105]
d2pblb_ : (VAL86) (ARG107) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Uncharacterized protein TM1040_2492 |Silicibacter sp. tm1040 [TaxId: 292414]
d1rf8a_ : (PRO174) (GLY204) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, c.69, c.2, d.58, c.79, c.90, c.56, c.7, c.55, b.60, b.121, c.154, d.118, c.34, d.15, d.16, b.88, c.46,
d.227, d.86, d.52, e.29