Tableau information
Concept source: d1cov3_ amino acid (a.a.) range (LEU43)(SER64)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU43) (VAL49) H1
(SER51) (GLN56) E2
(VAL58) (SER64) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -48.3° E2
H3 117.3° 143.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1h8tc_ : (LEU2043) (THR2064) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human echovirus 11 [TaxId: 12078]
d1yf2a2 : (SER364) (LEU416) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MJ0130 |Methanocaldococcus jannaschii [TaxId: 2190]
d3n5mb_ : (ALA416) (GLU447) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3nu7a_ : (PRO327) (ASN359) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3bn3a_ : (PRO281) (LYS305) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d3un1a_ : (PHE-4) (ASN28) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d4gb33_ : (LEU43) (SER64) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human coxsackievirus B3 [TaxId: 12072]
d4dpoa_ : (LEU-4) (GLU34) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Methanosarcina mazei [TaxId: 192952]
d2b2na1 : (HIS120) (GLY149) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d3nuba_ : (PRO327) (THR358) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4ib2b_ : (GLU229) (GLU247) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ruminococcus gnavus [TaxId: 411470]
d1sqya2 : (GLU335) (CYS358) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3ieia_ : (MET305) (ILE332) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2rfka2 : (GLU97) (GLU136) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2js7a_ : (MET13) (THR41) [view usage] : c.23.2.0 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vs6e1 : (LEU112) (ASP140) [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Escherichia coli [TaxId: 562]
d1es9a_ : (HIS166) (LEU216) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Platelet-activating factor acetylhydrolase |Cow (Bos taurus), alpha1 [TaxId: 9913]
d1r1a3_ : (LEU43) (ASN64) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]
d2gj9b_ : (LYS336) (GLN374) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Escherichia coli [TaxId: 469008]
d3tvuc1 : (ALA1632) (GLY1652) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1eg1a_ : (ALA350) (THR371) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Endoglucanase I [TaxId: 51453]
d3ej8a_ : (PRO322) (GLU343) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x5ic_ : (LEU43) (SER64) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human echovirus 7 [TaxId: 46018]
d3ff6a1 : (ALA1838) (GLY1858) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2k3ka1 : (THR45) (GLN70) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicesomal U1A protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1d0ca_ : (PRO308) (GLY329) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Cow (Bos taurus) [TaxId: 9913]
d3h7ra_ : (LYS68) (GLN100) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1jida_ : (ASP11) (GLY57) [view usage] : d.201.1.1 |SRP19 |SRP19 |SRP19 |SRP19 |Human (Homo sapiens) [TaxId: 9606]
d4gdyb_ : (TYR388) (LEU426) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uuza_ : (THR97) (SER124) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Pseudomonas aeruginosa [TaxId: 287]
d1xarb_ : (ASN288) (SER320) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |DC-SIGNR (DC-SIGN related receptor) |Human (Homo sapiens) [TaxId: 9606]
d2ogab_ : (ARG340) (VAL376) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d4f2da1 : (THR2) (THR40) [view usage] : c.85.1.2 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |AraA N-terminal and middle domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3r3qa_ : (TYR91) (ILE120) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2f2ab2 : (LEU141) (GLY178) [view usage] : d.128.1.5 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |GatB/GatE catalytic domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1uuzb_ : (PRO98) (SER124) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Pseudomonas aeruginosa [TaxId: 287]
d1j85a_ : (ASP50) (LYS71) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) |Haemophilus influenzae [TaxId: 727]
d3n5ma_ : (ALA416) (ILE449) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3grob_ : (LYS272) (LEU305) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4iwma_ : (LYS7) (GLY63) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2ogaa_ : (ARG340) (GLU374) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d1f15a_ : (ALA157) (LYS182) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]
d1ovwa_ : (GLN379) (SER398) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Fungus (Fusarium oxysporum) [TaxId: 5507]
d1yptb_ : (ASP393) (ASN420) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
d2vlnb_ : (ASP115) (LYS134) [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
d1a99a_ : (ALA339) (GLY369) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putrescine receptor (PotF) |Escherichia coli [TaxId: 562]
d1y37a_ : (LEU259) (SER294) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia sp. [TaxId: 384033]
d3b3db_ : (SER74) (LYS104) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1cov3_ : (LEU43) (SER64) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human coxsackievirus B3 [TaxId: 12072]
d2ogac_ : (ALA341) (VAL376) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d3dr4c_ : (LYS336) (GLN368) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
d4om7a_ : (HIS749) (ALA780) [view usage] : c.23.2.1 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |Toll/Interleukin receptor TIR domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3c8nc_ : (SER221) (TRP249) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1a05a_ : (PRO121) (ARG181) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thiobacillus ferrooxidans [TaxId: 920]
d1o61a_ : (ASN351) (LYS385) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Aminotransferase homolog WlaK (PglE, Cj1121c) |Campylobacter jejuni [TaxId: 197]
d3dr4a_ : (LYS336) (VAL369) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
d1g01a_ : (HIS360) (ALA398) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alkaline cellulase K catalytic domain |Bacillus sp. [TaxId: 1409]
d4ps6a_ : (THR121) (SER148) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d4dpob_ : (LEU-4) (GLU34) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Methanosarcina mazei [TaxId: 192952]
d1i7da_ : (ALA122) (ARG148) [view usage] : e.10.1.1 |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |DNA topoisomerase III |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, c.2, d.58, b.29, c.66, c.77, c.14, c.45, c.135, c.23, c.37, d.169, b.121, d.174, c.85, c.62, d.20,
c.116, d.287, d.128, d.4, d.265, c.22, e.10, d.233, d.201