Tableau information
Concept source: d2pdha_ amino acid (a.a.) range (GLU193)(ASP230)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU193) (GLY203) H1
(VAL205) (SER210) E2
(SER226) (ASP230) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 151.9° E2
H3 -95.0° -93.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gyya2 : (CYS128) (GLY179) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Aspartate beta-semialdehyde dehydrogenase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2c91b_ : (LEU180) (ARG231) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1yqwc_ : (PRO93) (GLY118) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1okda_ : (SER2) (CYS43) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin I |Crithidia fasciculata [TaxId: 5656]
d2ii6a_ : (SER113) (GLU153) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d3cina2 : (ALA213) (THR249) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Hypothetical protein TM1419 |Thermotoga maritima [TaxId: 2336]
d2iiqa_ : (SER113) (GLU153) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d4tpwb_ : (ASN172) (LYS206) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Human (Homo sapiens) [TaxId: 9606]
d2c83a_ : (SER113) (GLU153) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |automated matches |Pasteurella multocida [TaxId: 747]
d1n7za_ : (LYS15) (GLU53) [view usage] : b.127.1.1 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Bacteriophage T4 [TaxId: 10665]
d1vr0a1 : (SER84) (GLU113) [view usage] : c.148.1.1 |ComB-like |ComB-like |ComB-like |2-phosphosulfolactate phosphatase ComB |Clostridium acetobutylicum [TaxId: 1488]
d2d6fc2 : (LEU320) (TYR345) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1yrqa_ : (PRO93) (GLY118) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1dika1 : (ASP804) (ASP837) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1zhib1 : (TRP537) (PHE557) [view usage] : d.339.1.1 |ORC1-binding domain |ORC1-binding domain |ORC1-binding domain |Regulatory protein SIR1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1a8ea_ : (LEU146) (PRO175) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d3lqua_ : (ALA185) (HIS212) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d1lzla_ : (PHE101) (THR125) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Heroin esterase |Rhodococcus sp. [TaxId: 1831]
d1s1ma2 : (LEU73) (GLY106) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |CTP synthase PyrG, N-terminal domain |Escherichia coli [TaxId: 562]
d1cjka_ : (ASN509) (LEU536) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Adenylyl cyclase VC1, domain C1a |Dog (Canis familiaris) [TaxId: 9615]
d1vr0c_ : (SER84) (SER112) [view usage] : c.148.1.1 |ComB-like |ComB-like |ComB-like |2-phosphosulfolactate phosphatase ComB |Clostridium acetobutylicum [TaxId: 1488]
d3dj3a_ : (ASP40) (GLY70) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1n9za_ : (GLY251) (SER277) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d2bjia_ : (THR1056) (GLY1076) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1geha2 : (MET115) (GLU135) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Thermococcus kodakaraensis [TaxId: 311400]
d1pdxa_ : (GLY31) (LYS59) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas putida, putidaredoxin [TaxId: 303]
d1k1xb3 : (LYS191) (GLY232) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d2c0ha1 : (THR102) (THR145) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |endo-1,4-beta-mannosidase |Blue mussel (Mytilus edulis) [TaxId: 6550]
d3n34a_ : (GLY169) (LEU206) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d1zq1c2 : (GLY334) (ASN356) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain |Pyrococcus abyssi [TaxId: 29292]
d1j2ea1 : (ASN272) (ILE295) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl peptidase IV/CD26, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3w02b_ : (LYS102) (LYS132) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Staphylococcus aureus [TaxId: 418127]
d2g17a2 : (CYS154) (GLY190) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |N-acetyl-gamma-glutamyl-phosphate reductase ArgC |Salmonella typhimurium [TaxId: 90371]
d2k7qa1 : (VAL2030) (GLY2045) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.1, c.69, c.94, c.6, d.58, c.37, c.47, c.87, d.81, c.62, e.7, b.1, d.15, d.74, e.19, d.86, b.36, c.148, d.115,
b.127, d.339