Tableau information
Concept source: d1ogya2 amino acid (a.a.) range (ARG353)(VAL394)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG353) (GLY369) H1
(PRO378) (GLN384) E2
(GLN384) (VAL394) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -143.3° E2
H3 -88.8° 101.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1k83e1 : (THR117) (VAL141) [view usage] : c.52.3.1 |Restriction endonuclease-like |Eukaryotic RPB5 N-terminal domain |Eukaryotic RPB5 N-terminal domain |Eukaryotic RPB5 N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xk7a_ : (THR304) (SER330) [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
d1um1a_ : (GLY73) (HIS104) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Hypothetical protein KIAA1849 |Human (Homo sapiens) [TaxId: 9606]
d2bp7b1 : (THR7) (GLY37) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |automated matches |Pseudomonas putida [TaxId: 303]
d1y82d_ : (GLU121) (VAL140) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PF0355 |Pyrococcus furiosus [TaxId: 2261]
d1zrra_ : (GLU22) (TYR57) [view usage] : b.82.1.6 |Double-stranded beta-helix |RmlC-like cupins |Acireductone dioxygenase |Acireductone dioxygenase |Klebsiella pneumoniae [TaxId: 573]
d4cqmj_ : (SER146) (ILE198) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cd3f_ : (GLY78) (ALA107) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d3kjza_ : (ASN116) (GLU152) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2d1za1 : (LEU5) (SER28) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Streptomyces olivaceoviridis [TaxId: 1921]
d2yoab_ : (GLY384) (VAL419) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1y6la_ : (ASN79) (CYS113) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch8 [TaxId: 9606]
d4nv0a_ : (PRO32) (LYS62) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3vzpa_ : (ASP125) (LYS145) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d3w31b_ : (ASP81) (ALA114) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc13 [TaxId: 9606]
d1yt8a1 : (THR197) (ALA228) [view usage] : c.46.1.2 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Multidomain sulfurtransferase (rhodanese) |Thiosulfate sulfurtransferase PA2603 |Pseudomonas aeruginosa [TaxId: 287]
d1v6ya_ : (THR4) (SER28) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces olivaceoviridis [TaxId: 1921]
d1v0ma_ : (LEU5) (ASP27) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
d1vjfa_ : (ALA102) (SER124) [view usage] : d.116.1.1 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |YbaK/ProRS associated domain |Hypothetical protein CC0111 |Caulobacter crescentus [TaxId: 155892]
d4rsha_ : (TRP75) (ARG103) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Desulfitobacterium hafniense [TaxId: 272564]
d1od8a_ : (LEU5) (ASP27) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
d3ugba_ : (ASN79) (ASP112) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 D3 [TaxId: 9606]
d3pzva_ : (THR34) (ASN75) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4cgta4 : (THR114) (ILE190) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d1xw3a1 : (CYS99) (VAL127) [view usage] : d.268.1.4 |ParB/Sulfiredoxin |ParB/Sulfiredoxin |Sulfiredoxin-like |Sulfiredoxin |Human (Homo sapiens) [TaxId: 9606]
d1igwc_ : (HIS306) (LEU328) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Escherichia coli [TaxId: 562]
d3ls6a_ : (ALA185) (ALA211) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d2bwod_ : (GLY228) (GLY251) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d1t3va_ : (ARG75) (GLY106) [view usage] : c.55.5.1 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |MTH1175-like |Hypothetical protein TM1816 |Thermotoga maritima [TaxId: 2336]
d1um9b1 : (THR5) (GLY35) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |Branched-chain alpha-keto acid dehydrogenase, Pyr module |Thermus thermophilus [TaxId: 274]
d1jbra_ : (LYS72) (PRO112) [view usage] : d.1.1.3 |Microbial ribonucleases |Microbial ribonucleases |Ribotoxin |Restrictocin |Fungus (Aspergillus restrictus) [TaxId: 5064]
d4eria_ : (GLY213) (ARG245) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d3swob1 : (SER121) (MET155) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4ne4a_ : (LEU128) (ASN151) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d1k5wa_ : (ALA385) (ALA418) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3cyia_ : (SER99) (VAL127) [view usage] : d.268.1.4 |ParB/Sulfiredoxin |ParB/Sulfiredoxin |Sulfiredoxin-like |Sulfiredoxin |Human (Homo sapiens) [TaxId: 9606]
d2an9a_ : (ARG86) (LYS114) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase |Escherichia coli [TaxId: 562]
d3knrc_ : (ILE95) (GLY119) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Bacillus cereus [TaxId: 1396]
d1dkma_ : (THR356) (ALA403) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Escherichia coli [TaxId: 562]
d1chua3 : (GLU260) (ASP282) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |L-aspartate oxidase |Escherichia coli [TaxId: 562]
d1qw2a_ : (MSE62) (SER86) [view usage] : d.249.1.1 |Hypothetical protein Ta1206 |Hypothetical protein Ta1206 |Hypothetical protein Ta1206 |Hypothetical protein Ta1206 |Thermoplasma acidophilum [TaxId: 2303]
d1ivha2 : (ASN113) (VAL144) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isovaleryl-coa dehydrogenase, NM domains |Human (Homo sapiens) [TaxId: 9606]
d1ye5a_ : (GLU121) (GLU141) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PH0500 |Pyrococcus horikoshii [TaxId: 53953]
d1ddka_ : (GLU87) (GLY110) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Pseudomonas aeruginosa, IMP-1 [TaxId: 287]
d2duwa_ : (GLU107) (GLY134) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1uf9a_ : (LEU115) (SER146) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Dephospho-CoA kinase |Thermus thermophilus [TaxId: 274]
d1bg6a2 : (ILE69) (HIS88) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |N-(1-D-carboxylethyl)-L-norvaline dehydrogenase |Arthrobacter, strain 1c [TaxId: 1663]
d3vzra_ : (ASP125) (LYS145) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d4txea_ : (THR87) (ASP131) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3l1za_ : (ASN79) (ASP112) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hfel1 : (VAL88) (ALA113) [view usage] : c.96.1.1 |Fe-only hydrogenase |Fe-only hydrogenase |Fe-only hydrogenase |Fe-only hydrogenase larger subunit, C-domain |Desulfovibrio desulfuricans [TaxId: 876]
d3vzpb_ : (VAL123) (LYS145) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d2r83a1 : (ALA385) (ALA418) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Human (Homo sapiens) [TaxId: 9606]
d1cgua4 : (THR114) (ILE190) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d1m34a_ : (ILE259) (ASN280) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Azotobacter vinelandii [TaxId: 354]
d1o13a_ : (GLY74) (SER105) [view usage] : c.55.5.1 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |MTH1175-like |Hypothetical protein TM1816 |Thermotoga maritima [TaxId: 2336]
d1xasa_ : (LEU5) (ASP27) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
d3anxa_ : (GLY111) (ARG147) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1jata_ : (ASP81) (SER114) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]
d1peua2 : (ASP265) (ASN303) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2hbvb_ : (GLY213) (HIS246) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d3om8b_ : (ARG199) (ASP217) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1y82b_ : (GLU121) (GLU147) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PF0355 |Pyrococcus furiosus [TaxId: 2261]
d3shua_ : (ARG65) (VAL96) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i9v33 : (ALA518) (GLY548) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4ifka_ : (GLY213) (ARG245) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d1ntha_ : (LEU240) (GLY269) [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
d3knra_ : (ILE95) (GLY119) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Bacillus cereus [TaxId: 1396]
d4qs5c_ : (GLY227) (GLN264) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d2d59a_ : (ASN113) (GLY142) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Hypothetical protein PH1109 |Pyrococcus horikoshii [TaxId: 53953]
d1tjma_ : (GLY384) (ALA418) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2dxaa_ : (THR2) (LYS36) [view usage] : d.116.1.0 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4r9va_ : (MET272) (GLU297) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Photobacterium damselae [TaxId: 38293]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.123, b.82, c.67, c.69, c.81, c.94, c.2, c.108, c.56, c.92, d.157, c.66, c.23, c.37, c.36, c.7, c.55, e.6, b.121,
c.87, c.60, d.116, d.20, c.120, c.52, d.168, b.7, d.1, c.46, b.36, c.96, d.115, d.268, d.249