Tableau information
Concept source: d3v4xa1 amino acid (a.a.) range (ALA89)(HIS128)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA89) (LEU95) H1
(PHE101) (GLU109) E2
(TYR112) (HIS128) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 137.8° E2
H3 -59.8° 146.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3d7qb_ : (ASP78) (GLN104) [view usage] : d.326.1.0 |XisI-like |XisI-like |automated matches |automated matches |Nostoc punctiforme [TaxId: 272131]
d2g9fa1 : (ASN601) (GLN628) [view usage] : b.18.1.29 |Galactose-binding domain-like |Galactose-binding domain-like |Extended PAW domain |Peptide:N-glycanase, PNGase, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3qzua_ : (MET137) (LEU159) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Bacillus subtilis [TaxId: 224308]
d2x77a_ : (SER138) (GLU182) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d1c0na_ : (MET366) (LEU404) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d1t9za_ : (ASP191) (VAL247) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 |Human (Homo sapiens) [TaxId: 9606]
d3wlxa_ : (LEU195) (THR224) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1xd3c_ : (ASN12) (PRO46) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase UCH-l3 |Human (Homo sapiens) [TaxId: 9606]
d1inia_ : (ARG85) (ALA122) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Escherichia coli [TaxId: 562]
d2p8wt3 : (VAL627) (GLU673) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xzpa3 : (SER70) (GLY99) [view usage] : d.250.1.2 |Folate-binding domain |Folate-binding domain |TrmE formyl-THF-binding domain |TrmE formyl-THF-binding domain |Thermotoga maritima [TaxId: 2336]
d2ewba1 : (ALA427) (GLN484) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2d6fc2 : (THR348) (ILE392) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1yraa_ : (PHE147) (PHE182) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |ATP(GTP)-binding protein PAB0955 |Pyrococcus abyssi [TaxId: 29292]
d1i29a_ : (MET366) (LEU404) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d1z4na_ : (ILE96) (ASN127) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |beta-Phosphoglucomutase |Lactococcus lactis [TaxId: 1358]
d1mr3f_ : (SER135) (ASN176) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Baker's yeast (Saccharomyces cerevisiae), ARF2 [TaxId: 4932]
d1x4na1 : (ALA51) (ARG86) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Far upstream binding element, FBP |Mouse (Mus musculus) [TaxId: 10090]
d1ka5a_ : (ILE47) (GLY85) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Staphylococcus aureus [TaxId: 1280]
d1efwa2 : (ARG371) (GLY412) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Prokaryotic AspRS, insert domain |Thermus thermophilus, AspRS-1 [TaxId: 274]
d3l8ab_ : (GLY356) (ILE381) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1t8ea2 : (THR662) (HIS704) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |T7 phage DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d2ebhx3 : (VAL1240) (PHE1271) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1om0a_ : (ASP55) (TYR103) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Xylanase inhibitor protein I, XIP-I |Wheat (Triticum aestivum) [TaxId: 4565]
d1taqa4 : (ALA796) (LYS831) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Thermus aquaticus [TaxId: 271]
d3l0ya_ : (ASP191) (VAL247) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vhwe_ : (TYR132) (GLY175) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Vibrio cholerae [TaxId: 666]
d1j5ya2 : (PRO137) (GLY169) [view usage] : d.94.2.1 |HPr-like |Putative transcriptional regulator TM1602, C-terminal domain |Putative transcriptional regulator TM1602, C-terminal domain |Putative transcriptional regulator TM1602, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1e6ca_ : (THR122) (ARG169) [view usage] : c.37.1.2 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Shikimate kinase (AroK) |Shikimate kinase (AroK) |Erwinia chrysanthemi [TaxId: 556]
d1r0vd1 : (SER64) (LYS110) [view usage] : c.52.2.1 |Restriction endonuclease-like |tRNA-intron endonuclease catalytic domain-like |tRNA-intron endonuclease catalytic domain-like |Dimeric tRNA splicing endonuclease, domains 2 and 4 |Archaeoglobus fulgidus [TaxId: 2234]
d1rzma_ : (ALA50) (HIS77) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Thermotoga maritima [TaxId: 2336]
d2o7na_ : (THR267) (TYR307) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |Human (Homo sapiens) [TaxId: 9606]
d1de5b_ : (ASN79) (LYS124) [view usage] : c.1.15.2 |TIM beta/alpha-barrel |Xylose isomerase-like |L-rhamnose isomerase |L-rhamnose isomerase |Escherichia coli [TaxId: 562]
d2bufg_ : (GLY251) (ILE285) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2ghqa_ : (ASP191) (VAL247) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1blle2 : (ALA427) (GLN484) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |Leucine aminopeptidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d2qora_ : (LEU84) (SER113) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
d2w9ba1 : (ASP117) (ALA158) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1qwja_ : (ASN129) (GLY163) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Mouse (Mus musculus) [TaxId: 10090]
d3wlxb_ : (LEU195) (THR224) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d4lnma_ : (LEU195) (GLY225) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 945433]
d2ofsa_ : (ASN46) (ASN72) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |CD59 |Human (Homo sapiens) [TaxId: 9606]
d2j9aa1 : (ALA427) (GLU485) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1euza2 : (TRP92) (VAL131) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Thermococcus profundus [TaxId: 49899]
d1wm9a1 : (LEU178) (ARG216) [view usage] : d.96.1.1 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |GTP cyclohydrolase I |GTP cyclohydrolase I |Thermus thermophilus [TaxId: 274]
d3qypb_ : (GLY94) (LEU124) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1cl2b_ : (THR61) (ALA91) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystathionine beta-lyase, CBL |Escherichia coli [TaxId: 562]
d1vbga1 : (GLY522) (GLY556) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Maize (Zea mays) [TaxId: 4577]
d1yb3a1 : (SER121) (ARG163) [view usage] : d.296.1.2 |YktB/PF0168-like |YktB/PF0168-like |PF0168-like |Hypothetical protein PF0168 |Pyrococcus furiosus [TaxId: 2261]
d3ifwa_ : (PRO10) (VAL42) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xzqa3 : (SER70) (GLY99) [view usage] : d.250.1.2 |Folate-binding domain |Folate-binding domain |TrmE formyl-THF-binding domain |TrmE formyl-THF-binding domain |Thermotoga maritima [TaxId: 2336]
d2i5ia1 : (SER160) (CYS202) [view usage] : c.6.2.8 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |YdjC-like |Uncharacterized protein EF3048 |Enterococcus faecalis [TaxId: 1351]
d3l8aa_ : (GLY356) (PHE385) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d2ewna3 : (ALA69) (ILE98) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain |Escherichia coli [TaxId: 562]
d1coza_ : (SER51) (ASP83) [view usage] : c.26.1.2 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Cytidylyltransferase |CTP:glycerol-3-phosphate cytidylyltransferase |Bacillus subtilis [TaxId: 1423]
d2ec5a3 : (VAL1240) (PHE1271) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1vhjb_ : (TYR132) (GLY175) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Vibrio cholerae [TaxId: 666]
d3vaya_ : (LEU136) (LYS169) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 223283]
d1zq1c2 : (GLN361) (ILE404) [view usage] : d.74.4.1 |DCoH-like |GAD domain-like |GAD domain |Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain |Pyrococcus abyssi [TaxId: 29292]
d1o7ua_ : (PHE57) (PRO85) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin I |Crithidia fasciculata [TaxId: 5656]
d1hjza_ : (MET86) (GLY131) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Hypothetical protein AF1521 |Archaeoglobus fulgidus [TaxId: 2234]
d2etla1 : (GLU11) (SER41) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase isozyme l1 |Human (Homo sapiens) [TaxId: 9606]
d3inna_ : (GLU76) (ILE138) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d2ebfx3 : (VAL1240) (PHE1271) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d2uwra_ : (ASN46) (CYS78) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |CD59 |Human (Homo sapiens) [TaxId: 9606]
d4r9va_ : (LYS338) (ASN383) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Photobacterium damselae [TaxId: 38293]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.69, c.6, c.68, c.108, c.26, c.56, c.37, d.104, c.47, c.95, b.18, d.14, d.3, c.87, d.96, c.62, c.73,
c.50, d.250, c.52, c.58, d.74, d.94, d.51, g.7, d.326, d.296