Tableau information
Concept source: d2xffa_ amino acid (a.a.) range (LYS29)(GLY59)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS29) (GLY44) H1
(VAL48) (TRP54) E2
(TRP54) (GLY59) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -143.6° E2
H3 -144.9° -46.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1khua_ : (ASP428) (THR452) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
d1ng2a2 : (ARG301) (ARG330) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |p47pox (neutrophil cytosolic factor 1) |Human (Homo sapiens) [TaxId: 9606]
d1k3ta2 : (TRP211) (VAL232) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Trypanosoma cruzi [TaxId: 5693]
d1xxxa1 : (THR31) (THR61) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Dihydrodipicolinate synthase |Mycobacterium tuberculosis [TaxId: 1773]
d3irva_ : (SER72) (TYR115) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Pseudomonas syringae [TaxId: 264730]
d1s7ca2 : (TRP194) (VAL215) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Escherichia coli [TaxId: 562]
d3f1la_ : (ALA164) (PHE206) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3gmjc_ : (ASP418) (MET444) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3dwfa1 : (PHE194) (THR227) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Guinea pig (Cavia porcellus) [TaxId: 10141]
d1wu7b2 : (ASN295) (ASN325) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d1j0ha3 : (ALA362) (PHE386) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Neopullulanase, central domain |Bacillus stearothermophilus [TaxId: 1422]
d1i29a_ : (PRO182) (HIS207) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d2wqka_ : (THR216) (ASP249) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d3p1tc_ : (ASP125) (GLY148) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1vc2a2 : (ASP191) (LEU217) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Thermus thermophilus [TaxId: 274]
d3ewma_ : (TRP119) (ASN138) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d3p1ta_ : (ASP125) (GLY148) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1khud_ : (ASP428) (GLN453) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
d1khub_ : (ASP428) (GLN453) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
d3voja_ : (GLY180) (VAL216) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1xwya1 : (LEU39) (TRP69) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Deoxyribonuclease TatD (MttC) |Escherichia coli [TaxId: 562]
d3nyib_ : (THR44) (GLY81) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Eubacterium ventriosum [TaxId: 411463]
d3hjea1 : (SER417) (PRO459) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2ap9a1 : (ASP44) (GLY83) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d3ur8a_ : (LYS179) (ASN209) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d3p1td_ : (ASP125) (GLY148) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d3p1tb_ : (ASP125) (GLY148) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d3p1tb_ : (SER152) (TYR175) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d3f1ka_ : (TYR165) (ALA205) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4hl7a2 : (ASN215) (ASN243) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2pd2a_ : (ARG51) (ASN75) [view usage] : c.114.1.0 |DsrEFH-like |DsrEFH-like |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1amya2 : (GLY272) (SER292) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
d4qead_ : (ALA216) (GLU246) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d1tela1 : (SER1361) (HIS1388) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Chlorobium tepidum [TaxId: 1097]
d3dwfb_ : (PHE194) (THR227) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Guinea pig (Cavia porcellus) [TaxId: 10141]
d1wu7a2 : (ASN295) (ASN325) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d1rbsa_ : (LEU111) (ASN143) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |RNase H (RNase HI) |Escherichia coli [TaxId: 562]
d1pzxb_ : (PRO45) (PHE72) [view usage] : c.119.1.1 |DAK1/DegV-like |DAK1/DegV-like |DegV-like |Hypothetical protein apc36103 |Bacillus stearothermophilus [TaxId: 1422]
d1ck4a_ : (ASP262) (ASN293) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha1-beta1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1bq1a_ : (ILE112) (MET141) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.2, c.6, d.117, c.72, d.104, c.55, d.81, c.62, c.73, c.33, b.26, b.34, c.119, c.106, c.114