Tableau information
Concept source: d1l5va_ amino acid (a.a.) range (MET406)(PRO434)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET406) (VAL412) H1
(PHE415) (VAL420) E2
(ALA422) (PRO434) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -121.8° E2
H3 -101.6° 129.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1emwa_ : (ASP52) (GLY78) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Thermus thermophilus [TaxId: 274]
d3oxnb_ : (SER206) (LEU232) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d1kbla1 : (SER518) (GLY553) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d2ooda2 : (PRO213) (HIS249) [view usage] : c.1.9.9 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |SAH/MTA deaminase-like |Guanine deaminase |Bradyrhizobium japonicum [TaxId: 375]
d2d2fa_ : (SER73) (LEU109) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1s1ij_ : (PRO73) (TYR166) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3k6ua_ : (TRP142) (ASN179) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Methanosarcina acetivorans [TaxId: 2214]
d1fjgp_ : (VAL53) (GLY78) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Thermus thermophilus [TaxId: 274]
d3cg3a_ : (TRP136) (GLY173) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1mgva_ : (GLU226) (GLU264) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d1rhxa_ : (ILE51) (GLU80) [view usage] : c.114.1.2 |DsrEFH-like |DsrEFH-like |DsrH-like |Hypothetical protein TM0979 |Thermotoga maritima [TaxId: 2336]
d3lmna_ : (LEU9) (VAL45) [view usage] : d.324.1.1 |DUSP-like |DUSP-like |DUSP, domain in ubiquitin-specific proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fexa1 : (GLY111) (ALA128) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Hypothetical protein Atu0886 |Agrobacterium tumefaciens [TaxId: 358]
d3bkra_ : (SER91) (LYS120) [view usage] : d.106.1.0 |SCP-like |SCP-like |automated matches |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d1j5ta_ : (LEU199) (TRP228) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Thermotoga maritima [TaxId: 2336]
d1xhxa1 : (SER43) (ASN77) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d4czga1 : (GLY54) (GLY77) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d1mlyb_ : (GLU226) (ALA263) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d1g5ba_ : (ASN57) (SER85) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |lambda ser/thr protein phosphatase |Bacteriophage lambda [TaxId: 10710]
d4kk3a_ : (THR70) (SER93) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d1b24a2 : (ASN102) (ASN144) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-dmoI |Desulfurococcus mobilis [TaxId: 2274]
d4mqpb_ : (TYR236) (GLY273) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3oxnd_ : (LEU207) (ILE233) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d2m5ca_ : (ILE95) (GLY119) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Bacillus cereus [TaxId: 1396]
d1m74a3 : (SER160) (VAL190) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Bacillus subtilis [TaxId: 1423]
d4cxrb_ : (TYR236) (GLY273) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2hbka2 : (ARG271) (GLY305) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exosome complex exonuclease RRP6 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2zska2 : (CYS193) (GLU226) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d3s6jf_ : (GLY196) (LYS230) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 323]
d1b93a_ : (HIS33) (GLY57) [view usage] : c.24.1.2 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Methylglyoxal synthase, MgsA |Methylglyoxal synthase, MgsA |Escherichia coli [TaxId: 562]
d1jfla2 : (CYS194) (LEU226) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Aspartate racemase |Pyrococcus horikoshii OT3 [TaxId: 70601]
d2x0sa1 : (PHE546) (GLY578) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1jr2a_ : (LEU87) (GLY111) [view usage] : c.113.1.1 |HemD-like |HemD-like |HemD-like |Uroporphyrinogen III synthase (U3S, HemD) |Human (Homo sapiens) [TaxId: 9606]
d1bqqm_ : (PHE234) (TYR283) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Membrane-type matrix metalloproteinase (CDMT1-MMP) |Human (Homo sapiens) [TaxId: 9606]
d4luja_ : (ILE198) (LEU231) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1yzga1 : (ALA6) (MET38) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARL5B [TaxId: 9606]
d2hmxa_ : (SER73) (GLU108) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d4ilea_ : (LEU8) (SER42) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1knxa1 : (VAL6) (ASN28) [view usage] : c.98.2.1 |MurF and HprK N-domain-like |HprK N-terminal domain-like |HPr kinase/phoshatase HprK N-terminal domain |HPr kinase/phoshatase HprK N-terminal domain |Mycoplasma pneumoniae [TaxId: 2104]
d2k5ua_ : (SER76) (ASN112) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2cq4a1 : (GLU200) (LEU232) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |RNA binding protein 23 |Human (Homo sapiens) [TaxId: 9606]
d3umgg_ : (TRP118) (GLY153) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d1kija2 : (ALA89) (SER126) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA gyrase B |Thermus thermophilus [TaxId: 274]
d2vhpp1 : (ASP55) (ASN79) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Escherichia coli [TaxId: 562]
d1k0fa_ : (GLY98) (PRO118) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Periplasmic zinc binding protein TroA |Treponema pallidum [TaxId: 160]
d4pucb_ : (VAL62) (VAL103) [view usage] : a.118.8.6 |alpha-alpha superhelix |TPR-like |SusD-like |automated matches |Bacteroides uniformis [TaxId: 411479]
d2ex3a1 : (SER43) (ASN77) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d2j85b_ : (ASP28) (GLY63) [view usage] : d.321.1.1 |STIV B116-like |STIV B116-like |STIV B116-like |automated matches |Sulfolobus turreted icosahedral virus [TaxId: 269145]
d2fgza3 : (SER720) (VAL740) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Pullulanase PulA |Klebsiella pneumoniae [TaxId: 573]
d3umge_ : (TRP118) (ALA152) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, d.159, d.58, i.1, a.118, c.108, c.92, d.157, d.92, c.113, d.122, c.23, c.37, c.55, c.87, c.78, d.106, c.24,
d.95, c.98, c.44, a.61, c.114, d.324, d.321, d.27