Tableau information
Concept source: d1k1ed_ amino acid (a.a.) range (LYS84)(ALA117)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS84) (GLY96) H1
(THR102) (GLY106) E2
(ASP111) (ALA117) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 145.4° E2
H3 -39.5° -160.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3kkec_ : (ASP161) (GLY207) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1bw9a1 : (ALA150) (GLY198) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Phenylalanine dehydrogenase |Rhodococcus sp., M4 [TaxId: 1831]
d2a22b_ : (PRO25) (ILE58) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Cryptosporidium parvum [TaxId: 5807]
d1dlia3 : (LEU367) (VAL389) [view usage] : c.26.3.1 |Adenine nucleotide alpha hydrolase-like |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain |Streptococcus pyogenes [TaxId: 1314]
d1iw7c_ : (LEU882) (PHE922) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1ybha3 : (PRO463) (GLN494) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Acetohydroxyacid synthase catalytic subunit |Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
d1vbga2 : (VAL439) (GLY467) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Maize (Zea mays) [TaxId: 4577]
d3ehna_ : (ALA41) (THR69) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1gz3a1 : (GLN281) (GLY331) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d1tf7a1 : (SER157) (SER201) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Circadian clock protein KaiC |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d3tcra_ : (ASN75) (LEU107) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1ilya_ : (ALA65) (GLY108) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein L18 (L18p) |Thermus thermophilus [TaxId: 274]
d1ixsb2 : (PRO77) (GLU115) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d1fvpa_ : (TYR177) (GLN226) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium phosphoreum [TaxId: 659]
d1vlpa2 : (ASN155) (GLY201) [view usage] : c.1.17.2 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |Monomeric nicotinate phosphoribosyltransferase C-terminal domain |Nicotinate phosphoribosyltransferase, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4p3xa_ : (HIS-5) (ALA30) [view usage] : c.145.1.0 |NadA-like |NadA-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d4p3xa_ : (GLU176) (ALA204) [view usage] : c.145.1.0 |NadA-like |NadA-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2a22a1 : (PRO25) (ILE58) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Cryptosporidium parvum [TaxId: 5807]
d2oc6a1 : (GLU75) (SER118) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |Uncharacterized protein YdhG |Bacillus subtilis [TaxId: 1423]
d1eqpa_ : (GLN78) (ASN126) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exo-beta-(1,3)-glucanase |Yeast (Candida albicans) [TaxId: 5476]
d4toqa_ : (ILE241) (VAL273) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |automated matches |Punica granatum [TaxId: 22663]
d3m0ea_ : (PHE226) (LEU252) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d1fiqc2 : (PRO1262) (CYS1309) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Xanthine oxidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1poib_ : (THR8) (VAL44) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Glutaconate:CoA transferase beta |Acidaminococcus fermentans [TaxId: 905]
d3kkea_ : (GLU170) (GLY207) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1wdea_ : (SER74) (GLY111) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Aeropyrum pernix [TaxId: 56636]
d3exec_ : (GLU69) (GLY99) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d2lcfa_ : (SER127) (HIS166) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4m80a_ : (GLN78) (ASN126) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1cz1a_ : (GLN78) (ASN126) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exo-beta-(1,3)-glucanase |Yeast (Candida albicans) [TaxId: 5476]
d6gpba_ : (GLU290) (ILE346) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d4hgra_ : (LYS80) (ALA108) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1bmfd3 : (THR284) (LEU329) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of beta subunit of F1 ATP synthase |Cow (Bos taurus) [TaxId: 9913]
d2zwya1 : (SER303) (TYR351) [view usage] : c.1.8.11 |TIM beta/alpha-barrel |(Trans)glycosidases |Putative alpha-L-fucosidase, catalytic domain |automated matches |Thermotoga maritima [TaxId: 2336]
d1iona_ : (LYS100) (GLU135) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Pyrococcus horikoshii [TaxId: 53953]
d3ozgb_ : (ASN47) (ALA98) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 5838]
d1ufhb_ : (ALA106) (GLY144) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase YycN |Bacillus subtilis [TaxId: 1423]
d2d4va_ : (SER202) (ALA254) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Acidithiobacillus thiooxidans [TaxId: 930]
d1pjza_ : (ASN6) (GLY42) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Pseudomonas syringae [TaxId: 317]
d4hl7b2 : (LEU155) (GLN204) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d4jgga_ : (PRO83) (LYS135) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d4iwhb_ : (SER163) (ALA212) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1ghsa_ : (LEU205) (TYR250) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Plant beta-glucanases |Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]
d1bsla_ : (THR275) (HIS323) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d2hldd2 : (ALA286) (LEU329) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rxta2 : (LEU377) (LEU411) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Human (Homo sapiens) [TaxId: 9606]
d4hl7a2 : (LEU155) (ILE206) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1p4sa_ : (ASP62) (ARG103) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1ovya_ : (ASN70) (GLY117) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein L18 (L18p) |Bacillus stearothermophilus [TaxId: 1422]
d3hdoa_ : (PRO165) (HIS201) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2c81a_ : (ASN145) (ASP182) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Bacillus circulans [TaxId: 1397]
d2nvva2 : (PRO226) (ASP272) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
d4iwha_ : (SER163) (ALA212) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1bwla_ : (ASP125) (ASN155) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Yeast (Candida albicans) [TaxId: 5476]
d1uu1b_ : (GLU156) (LYS190) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Thermotoga maritima [TaxId: 2336]
d3fmxx_ : (ARG166) (PRO215) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
d1zvva2 : (ASP160) (GLY208) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
d3vmkb_ : (SER166) (PRO215) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Shewanella benthica [TaxId: 43661]
d3oehd2 : (ALA286) (LEU329) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1w0da_ : (SER52) (ASP91) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Mycobacterium tuberculosis [TaxId: 1773]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.2, d.159, a.118, c.108, c.90, c.26, c.66, c.77, c.124, c.93, c.23, c.37, c.36, c.55, c.87, c.57, d.108, d.133,
c.8, c.61, d.198, c.145, e.29