Tableau information
Concept source: d1yk3d_ amino acid (a.a.) range (ASP114)(ARG141)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP114) (TYR120) H1
(ASP126) (ASP135) E2
(ASP135) (ARG141) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 125.4° E2
H3 -27.7° 118.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pgja2 : (PHE107) (LYS138) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |6-phosphogluconate dehydrogenase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2o6ta_ : (LEU8) (GLY53) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical thioesterase PA5185 |Pseudomonas aeruginosa [TaxId: 287]
d1i80b_ : (ASP9) (ALA41) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Mycobacterium tuberculosis [TaxId: 1773]
d2av9a1 : (LEU8) (GLY53) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical thioesterase PA5185 |Pseudomonas aeruginosa [TaxId: 287]
d2hi0a_ : (VAL214) (LEU237) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactobacillus delbrueckii [TaxId: 1584]
d4na7a_ : (ALA55) (LYS77) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kqga_ : (GLU293) (HIS336) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |automated matches |Salmonella enterica [TaxId: 99287]
d2iw0a1 : (LEU216) (GLY239) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Chitin deacetylase |Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]
d3oiga_ : (SER236) (THR256) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Bacillus subtilis [TaxId: 1423]
d1j33a_ : (HIS283) (MET324) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Thermus thermophilus [TaxId: 274]
d1lqmh_ : (LEU4) (GLY34) [view usage] : d.17.5.1 |Cystatin-like |Uracil-DNA glycosylase inhibitor protein |Uracil-DNA glycosylase inhibitor protein |Uracil-DNA glycosylase inhibitor protein |Bacteriophage pbs2 [TaxId: 10684]
d3f2gb2 : (SER176) (MET207) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d2pb9a1 : (ASP340) (GLU378) [view usage] : c.74.1.2 |AraD/HMP-PK domain-like |AraD/HMP-PK domain-like |Phosphomethylpyrimidine kinase C-terminal domain-like |Phosphomethylpyrimidine kinase |Pyrococcus furiosus [TaxId: 2261]
d2o6ba1 : (LEU8) (GLY53) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical thioesterase PA5185 |Pseudomonas aeruginosa [TaxId: 287]
d1fsza2 : (PHE236) (ASP276) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Methanococcus jannaschii [TaxId: 2190]
d1lqmb_ : (SER5) (GLY34) [view usage] : d.17.5.1 |Cystatin-like |Uracil-DNA glycosylase inhibitor protein |Uracil-DNA glycosylase inhibitor protein |Uracil-DNA glycosylase inhibitor protein |Bacteriophage pbs2 [TaxId: 10684]
d4kqfa_ : (GLU293) (HIS336) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |automated matches |Salmonella enterica [TaxId: 99287]
d2zyga1 : (ARG113) (LYS136) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1jh8a_ : (GLU293) (HIS336) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Salmonella typhimurium [TaxId: 90371]
d2x3yc_ : (GLY153) (GLY195) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 272560]
d3kbba_ : (LYS192) (GLU214) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d4ewpa1 : (SER40) (GLY78) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Micrococcus luteus [TaxId: 465515]
d1w5ea2 : (PHE236) (ASP276) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Methanococcus jannaschii [TaxId: 2190]
d1em8d_ : (PRO52) (MET78) [view usage] : c.126.1.1 |DNA polymerase III psi subunit |DNA polymerase III psi subunit |DNA polymerase III psi subunit |DNA polymerase III psi subunit |Escherichia coli [TaxId: 562]
d1w5812 : (PHE236) (ASP276) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Methanococcus jannaschii [TaxId: 2190]
d2hk7b2 : (ALA163) (VAL177) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Aquifex aeolicus [TaxId: 63363]
d4jgaa1 : (CYS223) (GLY265) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Rickettsia rickettsii [TaxId: 392021]
d2gq0b_ : (SER415) (SER443) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2av9d_ : (LEU8) (GLY53) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1o6da_ : (GLU107) (ILE143) [view usage] : c.116.1.3 |alpha/beta knot |alpha/beta knot |YbeA-like |Hypothetical protein TM0844 |Thermotoga maritima [TaxId: 2336]
d4dlla1 : (THR127) (GLN159) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d4dqna_ : (ASN155) (GLN203) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d1lqmd_ : (ASN3) (GLY34) [view usage] : d.17.5.1 |Cystatin-like |Uracil-DNA glycosylase inhibitor protein |Uracil-DNA glycosylase inhibitor protein |Uracil-DNA glycosylase inhibitor protein |Bacteriophage pbs2 [TaxId: 10684]
d1kjna_ : (GLY58) (GLU73) [view usage] : c.115.1.1 |Hypothetical protein MTH777 (MT0777) |Hypothetical protein MTH777 (MT0777) |Hypothetical protein MTH777 (MT0777) |Hypothetical protein MTH777 (MT0777) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4ospa_ : (ASP234) (GLY253) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces fradiae [TaxId: 1906]
d1h5qa_ : (SER242) (TRP262) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Mannitol dehydrogenase |Mushroom (Agaricus bisporus) [TaxId: 5341]
d2jkva1 : (ARG114) (TYR137) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, c.6, c.108, b.47, c.56, c.80, c.74, c.39, c.95, d.14, e.17, d.108, d.17, d.38, c.116, d.79, c.115, d.357, c.126