Tableau information
Concept source: d2g7ea_ amino acid (a.a.) range (PHE24)(LEU59)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE24) (ARG36) H1
(GLU47) (GLY52) E2
(LYS53) (LEU59) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -126.5° E2
E3 56.2° 157.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2uz5a_ : (ASN2) (LYS35) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Legionella pneumophila [TaxId: 446]
d1s2ha_ : (GLY10) (ASP58) [view usage] : d.135.1.1 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |Human (Homo sapiens) [TaxId: 9606]
d1nyoa_ : (SER108) (GLY136) [view usage] : b.118.1.1 |FAS1 domain |FAS1 domain |FAS1 domain |Immunogenic protein MPT70 |Mycobacterium tuberculosis [TaxId: 1773]
d2xzm7_ : (ARG47) (LEU68) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3o2ma_ : (ASN63) (ASP112) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ouoa_ : (SER23) (ASN58) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d1iaih2 : (ASN163) (THR190) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d3n0sa_ : (LYS112) (GLY137) [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d3h3ub2 : (SER187) (SER214) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2kmta_ : (PRO42) (THR69) [view usage] : b.34.6.1 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |CcdB |CcdB |Vibrio fischeri [TaxId: 668]
d3k5la1 : (VAL225) (LYS270) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3d0sb2 : (GLU189) (SER214) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1xs5a_ : (SER114) (ARG150) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative lipoprotein (NlpA family) |Treponema pallidum [TaxId: 160]
d1g9ng_ : (ASP368) (ASN386) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d2nygd_ : (GLY113) (GLY139) [view usage] : c.140.1.2 |TTHA0583/YokD-like |TTHA0583/YokD-like |Aminoglycoside 3-N-acetyltransferase-like |Uncharacterized protein YokD |Bacillus subtilis [TaxId: 1423]
d3e5xa2 : (HIS191) (ASN218) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d1li4a1 : (VAL308) (ARG329) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |S-adenosylhomocystein hydrolase |Human (Homo sapiens) [TaxId: 9606]
d4fp5d_ : (ASP57) (ALA98) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |automated matches |Escherichia coli [TaxId: 562]
d2g7ea_ : (PHE24) (LEU59) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |automated matches |Vibrio cholerae [TaxId: 666]
d1e9sb_ : (PRO464) (LYS487) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Bacterial conjugative coupling protein TrwB |Escherichia coli [TaxId: 562]
d4a17w_ : (GLU53) (ASP98) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1ekma1 : (GLY324) (LYS360) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Yeast (Hansenula polymorpha) [TaxId: 4905]
d1hcua_ : (SER451) (SER491) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1by5a_ : (SER326) (ASP394) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d3r95a_ : (THR8) (TYR22) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3bz6a1 : (GLN66) (HIS95) [view usage] : a.4.5.75 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PSPTO2686-like |Hypothetical protein PSPTO2686 |Pseudomonas syringae pv. tomato [TaxId: 323]
d1klka_ : (GLY58) (GLY89) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
d1go4d_ : (THR12) (ASP58) [view usage] : d.135.1.1 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |Human (Homo sapiens) [TaxId: 9606]
d3neya_ : (SER335) (LYS362) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hcuc_ : (PHE452) (SER491) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1h16a_ : (GLY528) (GLY561) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1kywa1 : (LEU81) (LEU108) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4fnfa_ : (TYR55) (ALA98) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |automated matches |Escherichia coli [TaxId: 562]
d1dyra_ : (ARG59) (GLY89) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
d1l0li_ : (SER3) (LEU26) [view usage] : d.184.1.3 |Non-globular alpha+beta subunits of globular proteins |Non-globular alpha+beta subunits of globular proteins |Ubiquinol-cytochrome c reductase 8 kDa protein |Ubiquinol-cytochrome c reductase 8 kDa protein |Cow (Bos taurus) [TaxId: 9913]
d1oupb_ : (SER23) (PRO57) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d1c8za_ : (LEU250) (LEU287) [view usage] : d.23.1.1 |Tubby C-terminal domain-like |Tubby C-terminal domain-like |Transcriptional factor tubby, C-terminal domain |Transcriptional factor tubby, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2evra2 : (ALA145) (LEU179) [view usage] : d.3.1.16 |Cysteine proteinases |Cysteine proteinases |NlpC/P60 |Cell wall-associated hydrolase Spr C-terminal domain |Nostoc punctiforme [TaxId: 272131]
d3cpfa2 : (ASP118) (ALA146) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u5tc2 : (PRO169) (ILE199) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar protein sorting-associated protein VPS25 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1s31a_ : (LEU306) (LEU343) [view usage] : d.23.1.1 |Tubby C-terminal domain-like |Tubby C-terminal domain-like |Transcriptional factor tubby, C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bkba2 : (GLU110) (ILE134) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Pyrobaculum aerophilum [TaxId: 13773]
d1hzea_ : (PRO29) (ASP62) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Escherichia coli [TaxId: 562]
d2a3zb_ : (ILE184) (GLY218) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Deoxyribonuclease I |Cow (Bos taurus) [TaxId: 9913]
d4fo2a_ : (ASP57) (ALA98) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |automated matches |Escherichia coli [TaxId: 562]
d1ufhb_ : (ALA39) (HIS79) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase YycN |Bacillus subtilis [TaxId: 1423]
d1tzoa2 : (PRO184) (SER204) [view usage] : b.179.1.1 |Anthrax protective antigen N-terminal-like |PA14-like |PA14 |PA14 |Bacillus anthracis
d3ugja7 : (ASP1205) (THR1249) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |FGAM synthase PurL, amidotransferase domain |Salmonella enterica [TaxId: 90371]
d1qb5d_ : (ASP57) (ALA98) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Heat-labile toxin |Escherichia coli, type IIB [TaxId: 562]
d1gmwd1 : (PRO21) (LEU43) [view usage] : b.107.1.1 |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d1kv9a2 : (ASP4) (LEU33) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase, N-terminal domain |Pseudomonas putida, hk5 [TaxId: 303]
d1mufa2 : (THR251) (VAL277) [view usage] : b.85.7.1 |beta-clip |SET domain |Histone lysine methyltransferases |Histone H3 K4-specific methyltransferase SET7/9 catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2czjg1 : (LEU89) (LYS123) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Thermus thermophilus [TaxId: 274]
d4j98a_ : (THR524) (GLU565) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Fibroblast growth factor receptor 2 |Human (Homo sapiens) [TaxId: 9606]
d2zmea2 : (GLU207) (LEU236) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1peua2 : (ILE592) (ALA624) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2vnda_ : (PHE24) (LEU59) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |automated matches |Vibrio cholerae [TaxId: 666]
d2g7fa_ : (PHE24) (LEU59) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |automated matches |Vibrio cholerae [TaxId: 666]
d1a7aa1 : (VAL308) (ARG329) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |S-adenosylhomocystein hydrolase |Human (Homo sapiens) [TaxId: 9606]
d1bvsa3 : (THR31) (SER63) [view usage] : b.40.4.2 |OB-fold |Nucleic acid-binding proteins |DNA helicase RuvA subunit, N-terminal domain |DNA helicase RuvA subunit, N-terminal domain |Mycobacterium leprae [TaxId: 1769]
d2ivka_ : (PHE24) (ASN58) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |automated matches |Vibrio vulnificus [TaxId: 672]
d1cm5a_ : (GLY528) (GLY561) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1b3ra1 : (VAL307) (LEU328) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |S-adenosylhomocystein hydrolase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2hbwa2 : (ALA145) (LEU179) [view usage] : d.3.1.16 |Cysteine proteinases |Cysteine proteinases |NlpC/P60 |automated matches |Anabaena variabilis [TaxId: 240292]
d1od2b1 : (THR1659) (LYS1691) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2joka_ : (ARG142) (PRO169) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |Effector protein BopE |Burkholderia pseudomallei [TaxId: 28450]
d2axza2 : (GLU270) (GLU306) [view usage] : a.118.8.4 |alpha-alpha superhelix |TPR-like |PrgX C-terminal domain-like |automated matches |Enterococcus faecalis [TaxId: 1351]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.94, c.2, i.1, a.118, c.140, b.30, a.102, c.14, c.23, f.4, d.144, b.40, c.37, c.7, c.55, d.151, d.3, c.71, b.85,
b.1, d.108, b.179, b.34, a.4, b.43, d.26, d.4, d.23, d.184, b.118, d.172, a.168, d.135, b.111, b.107