Tableau information
Concept source: d4geka_ amino acid (a.a.) range (SER210)(PHE233)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER210) (GLY222) H1
(GLU224) (LEU228) E2
(TRP229) (PHE233) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 161.1° E2
E3 154.7° -32.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dh1a_ : (CYS107) (TYR171) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1espa_ : (ALA69) (ASP125) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Neutral protease |Bacillus cereus, strain dsm 3101 [TaxId: 1396]
d2py0a_ : (GLY25) (LEU73) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Type IV Pilin Pak |Pseudomonas aeruginosa [TaxId: 287]
d2xzms_ : (LYS57) (GLY104) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2jalb_ : (GLU329) (ASP357) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermotoga maritima [TaxId: 2336]
d1tm3i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1sgoa_ : (ASP32) (ASP61) [view usage] : d.82.3.1 |N domain of copper amine oxidase-like |Hypothetical protein c14orf129, hspc210 |Hypothetical protein c14orf129, hspc210 |Hypothetical protein c14orf129, hspc210 |Human (Homo sapiens) [TaxId: 9606]
d1yq2a5 : (SER447) (TYR483) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Arthrobacter sp. c2-2 [TaxId: 192168]
d1oifa_ : (GLU329) (ASP357) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Thermotoga maritima [TaxId: 2336]
d1tm7i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d2ci2i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1y33i1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1ylia_ : (GLY36) (LYS71) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Putative acyl-coa thioester hydrolase HI0827 |Haemophilus influenzae [TaxId: 727]
d1y4ai1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d3dh1d_ : (ILE108) (PRO156) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3j38p_ : (ALA58) (GLY102) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2ohdf_ : (VAL100) (TYR147) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2rfka2 : (TYR182) (ARG205) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1y3di1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1kbqb_ : (MET164) (SER191) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |NAD(P)H:quinone reductase |Human (Homo sapiens) [TaxId: 9606]
d3sxua_ : (ALA55) (PRO85) [view usage] : c.128.1.1 |DNA polymerase III chi subunit |DNA polymerase III chi subunit |DNA polymerase III chi subunit |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1tmgi_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d4i03a_ : (ALA133) (PHE163) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w3ja_ : (GLU329) (ASP357) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Thermotoga maritima [TaxId: 2336]
d1y3bi1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1piia1 : (GLN339) (ASN380) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |N-(5'phosphoribosyl)antranilate isomerase, PRAI |Escherichia coli [TaxId: 562]
d1ve3b_ : (ASP144) (ASP170) [view usage] : c.66.1.43 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CAC2371-like |Hypothetical protein PH0226 |Pyrococcus horikoshii [TaxId: 53953]
d1y1ki1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d2gjvb_ : (LEU4) (TYR46) [view usage] : d.323.1.2 |Phage tail protein-like |Phage tail protein-like |STM4215-like |Putative cytoplasmic protein STM4215 |Salmonella typhimurium [TaxId: 90371]
d1y3ci1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1oqwa_ : (LEU3) (LEU73) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Type IV Pilin Pak |Pseudomonas aeruginosa [TaxId: 287]
d2ey4a2 : (ILE183) (ARG205) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Pyrococcus furiosus [TaxId: 2261]
d2gjva1 : (LEU4) (TYR46) [view usage] : d.323.1.2 |Phage tail protein-like |Phage tail protein-like |STM4215-like |Putative cytoplasmic protein STM4215 |Salmonella typhimurium [TaxId: 90371]
d1u1ia2 : (ALA267) (ILE296) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Myo-inositol 1-phosphate synthase |Archaeoglobus fulgidus [TaxId: 2234]
d1vjza_ : (SER149) (ARG198) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase homologue TM1752 |Thermotoga maritima [TaxId: 2336]
d1th5a1 : (ASN157) (GLY187) [view usage] : d.52.8.1 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |NifU C-terminal domain-like |NifU-like protein 1, NIFUL1 |Rice (Oryza sativa) [TaxId: 4530]
d3r5ga_ : (ALA292) (GLY335) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1lmsa_ : (LEU9) (GLY34) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1f0xa2 : (SER54) (THR101) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |D-lactate dehydrogenase |Escherichia coli [TaxId: 562]
d1ozbf_ : (GLN110) (ASP143) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Haemophilus influenzae [TaxId: 727]
d1egla_ : (THR17) (ASN57) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Eglin C |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d1y3fi1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1to1i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1fhla_ : (ASP102) (ILE133) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-1,4-galactanase |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1ku0a_ : (ASN321) (GLY352) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase L1 |Bacillus stearothermophilus [TaxId: 1422]
d1nlna_ : (GLU5) (ILE42) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Human adenovirus 2 proteinase, adenain |Mastadenovirus H2 [TaxId: 10515]
d1r27a1 : (ILE1183) (VAL1223) [view usage] : b.52.2.2 |Double psi beta-barrel |ADC-like |Formate dehydrogenase/DMSO reductase, C-terminal domain |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d1tm4i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1coai_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1tm5i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d2eyqa2 : (SER391) (ILE427) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d2ey4b2 : (ILE183) (ARG205) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Pyrococcus furiosus [TaxId: 2261]
d3dh1b_ : (CYS107) (PRO156) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tm1i_ : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1y34i1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
d1siwa1 : (ILE1183) (VAL1223) [view usage] : b.52.2.2 |Double psi beta-barrel |ADC-like |Formate dehydrogenase/DMSO reductase, C-terminal domain |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d2octb_ : (THR13) (VAL47) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k25a1 : (SER645) (LEU689) [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1y48i1 : (SER31) (VAL70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Chymotrypsin inhibitor CI-2 |Barley (Hordeum vulgare) [TaxId: 4513]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, d.58, i.1, c.66, d.92, c.23, c.37, d.3, d.81, c.97, d.17, d.38, b.52, d.145, a.3, d.82, d.33, d.24, d.52,
d.265, d.323, c.128, d.11, d.40