Tableau information
Concept source: d1zhoa1 amino acid (a.a.) range (GLU183)(ASN225)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU183) (LYS200) H1
(ARG210) (THR216) E2
(PRO220) (ASN225) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 148.0° E2
E3 -61.0° 139.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4oo0b_ : (ALA61) (LYS106) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1g3na_ : (PRO118) (GLY165) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK6 |Human (Homo sapiens) [TaxId: 9606]
d1f35a_ : (GLU119) (PHE160) [view usage] : b.94.1.1 |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Mouse (Mus musculus) [TaxId: 10090]
d3o3ga_ : (GLY2) (LYS38) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |automated matches |Thermotoga maritima [TaxId: 2336]
d1xoya_ : (LYS126) (SER160) [view usage] : b.18.1.26 |Galactose-binding domain-like |Galactose-binding domain-like |Hypothetical protein AT3g04780/F7O18_27 |Hypothetical protein AT3g04780/F7O18_27 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1k2yx2 : (PRO220) (THR252) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d2j61a_ : (CYS80) (VAL106) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d5ldha2 : (CYS165) (VAL202) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d1q27a_ : (THR77) (GLU120) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans [TaxId: 1299]
d1i2sa_ : (LEU220) (ALA248) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Bacillus licheniformis [TaxId: 1402]
d1huka_ : (SER27) (ILE59) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ldha_ : (CYS165) (SER204) [view usage] : i.12.1.1 |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Lactate dehydrogenase |Dogfish (Squalus acanthias) [TaxId: 7797]
d1hyga2 : (THR148) (LEU185) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |MJ0490, lactate/malate dehydrogenase |Methanococcus jannaschii [TaxId: 2190]
d1cjya1 : (THR108) (GLU137) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Domain from cytosolic phospholipase A2 |Human (Homo sapiens) [TaxId: 9606]
d2j0gb_ : (CYS80) (VAL106) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qwzd_ : (LYS7) (ASN40) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Silicibacter sp. [TaxId: 292414]
d2ch2a_ : (SER131) (GLU163) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
d1j1ba_ : (MET162) (ARG209) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d1i10a2 : (LEU164) (VAL199) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Human (Homo sapiens), muscle isoform (M chain) [TaxId: 9606]
d1joba_ : (ALA220) (PHE260) [view usage] : b.94.1.1 |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Mouse (Mus musculus) [TaxId: 10090]
d4p0ea_ : (SER40) (LYS82) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1hlpa2 : (LEU165) (VAL200) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
d2bh2b2 : (SER212) (SER243) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d2j3od_ : (CYS80) (VAL106) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zfzb3 : (ASN527) (LYS559) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Staphylococcus aureus [TaxId: 158878]
d1ylka_ : (ALA123) (PRO163) [view usage] : c.53.2.0 |Resolvase-like |beta-carbonic anhydrase, cab |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1j7xa_ : (ALA158) (SER191) [view usage] : c.14.1.2 |ClpP/crotonase |ClpP/crotonase |Tail specific protease, catalytic domain |Interphotoreceptor retinoid-binding protein IRBP |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1cn2a_ : (ASP23) (HIS50) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Mexican scorpion (Centruroides noxius), toxin II [TaxId: 6878]
d1joda_ : (GLU219) (ASN261) [view usage] : b.94.1.1 |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Olfactory marker protein |Mouse (Mus musculus) [TaxId: 10090]
d1clca2 : (PHE110) (ILE134) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |CelD cellulase, N-terminal domain |Clostridium thermocellum [TaxId: 1515]
d2j0gc_ : (CYS80) (VAL106) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tjua_ : (LYS194) (ILE225) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2afim_ : (MET58) (GLY90) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1kpta_ : (SER62) (TYR101) [view usage] : d.70.1.1 |Yeast killer toxins |Yeast killer toxins |Virally encoded KP4 toxin |Virally encoded KP4 toxin |Ustilago maydis, P4 strain [TaxId: 5270]
d1hh2p4 : (LYS20) (GLU66) [view usage] : d.202.1.1 |Transcription factor NusA, N-terminal domain |Transcription factor NusA, N-terminal domain |Transcription factor NusA, N-terminal domain |Transcription factor NusA, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1yrka_ : (GLY87) (PHE121) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yeoa_ : (ASP20) (TYR50) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Leiurus quinquestriatus [TaxId: 6884]
d2j0ga_ : (CYS80) (VAL106) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lk9b_ : (MET6) (ASN42) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Alliinase |Garlic (Allium sativum) [TaxId: 4682]
d2ctda1 : (LEU21) (LYS46) [view usage] : g.37.1.1 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |Classic zinc finger, C2H2 |Zinc finger protein 512, ZNF512 |Human (Homo sapiens) [TaxId: 9606]
d1ldma2 : (LEU165) (VAL200) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Dogfish (Squalus acanthias) [TaxId: 7797]
d1g5pa_ : (THR56) (GLY90) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1zkmc_ : (GLY191) (GLY239) [view usage] : c.111.1.0 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1rw4a_ : (THR56) (SER88) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3gpdr2 : (THR152) (THR210) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Human (Homo sapiens) [TaxId: 9606]
d1u0nd_ : (ALA49) (ASP73) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d1o5dt1 : (LEU59) (PRO102) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Extracellular region of human tissue factor |Human (Homo sapiens) [TaxId: 9606]
d1xwdf_ : (CYS188) (ASP212) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d1uwva2 : (SER212) (SER243) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1cefa_ : (ALA262) (ASP288) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., R61 [TaxId: 1931]
d1u0aa_ : (ARG35) (SER66) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Paenibacillus macerans [TaxId: 44252]
d1cl2b_ : (GLY137) (ASP165) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystathionine beta-lyase, CBL |Escherichia coli [TaxId: 562]
d4aj1a2 : (LEU164) (VAL199) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3d9ya_ : (SER1) (ALA34) [view usage] : d.110.1.0 |Profilin-like |Profilin (actin-binding protein) |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2c81a_ : (ASP119) (ASN145) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Bacillus circulans [TaxId: 1397]
d1bdya_ : (VAL88) (PHE121) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Domain from protein kinase C delta |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ldxa2 : (ASN163) (ILE199) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Mouse (Mus musculus) [TaxId: 10090]
d1vkza3 : (SER230) (GLU273) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 |Thermotoga maritima [TaxId: 2336]
d2bh2a2 : (SER213) (SER243) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1vd5a_ : (TRP2) (ASP38) [view usage] : a.102.1.7 |alpha/alpha toroid |Six-hairpin glycosidases |Glycosyl Hydrolase Family 88 |Unsaturated glucuronyl hydrolase |Bacillus sp. GL1 [TaxId: 84635]
d2hw8a1 : (PRO182) (ASN225) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Thermus thermophilus [TaxId: 274]
d1omea_ : (LEU220) (ALA248) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d1ehxa_ : (ALA54) (LYS88) [view usage] : b.1.18.13 |Immunoglobulin-like beta-sandwich |E set domains |Cellulosomal scaffoldin protein CipC, module x2.1 |Cellulosomal scaffoldin protein CipC, module x2.1 |Clostridium cellulolyticum [TaxId: 1521]
d2hgaa1 : (ASN58) (ASN91) [view usage] : b.36.1.6 |PDZ domain-like |PDZ domain-like |MTH1368 C-terminal domain-like |Uncharacterized protein MTH1368 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1tilb_ : (HIS24) (ALA58) [view usage] : c.13.2.1 |SpoIIaa-like |SpoIIaa-like |Anti-sigma factor antagonist SpoIIaa |Anti-sigma factor antagonist SpoIIaa |Bacillus stearothermophilus [TaxId: 1422]
d4p0eb_ : (SER40) (LYS82) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d4kqqa2 : (THR414) (GLN447) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1lk9a_ : (MET6) (ASN42) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Alliinase |Garlic (Allium sativum) [TaxId: 4682]
d2p4va2 : (SER122) (VAL156) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1kmxa_ : (ASP33) (ARG54) [view usage] : g.25.1.1 |Heparin-binding domain from vascular endothelial growth factor |Heparin-binding domain from vascular endothelial growth factor |Heparin-binding domain from vascular endothelial growth factor |Heparin-binding domain from vascular endothelial growth factor |Human (Homo sapiens) [TaxId: 9606]
d4p0ub_ : (SER40) (LYS82) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 1182738]
d2yw2a2 : (GLU239) (GLU283) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d4g2pa_ : (PRO351) (VAL386) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Salmonella enterica [TaxId: 588858]
d1gxie_ : (SER26) (ALA61) [view usage] : b.34.4.2 |SH3-like barrel |Electron transport accessory proteins |Photosystem I accessory protein E (PsaE) |Photosystem I accessory protein E (PsaE) |Synechocystis sp. PCC 6803 [TaxId: 1148]
d3mpzd_ : (CYS86) (LEU112) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2w7da_ : (THR323) (ALA361) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d2qwzc_ : (ASP6) (ASN40) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Silicibacter sp. [TaxId: 292414]
d1mg5a_ : (SER215) (TRP247) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Drosophila alcohol dehydrogenase |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1dhra_ : (GLU202) (PHE240) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Dihydropteridin reductase (pteridine reductase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.10, c.67, c.2, b.29, b.47, a.102, c.66, c.14, d.144, b.40, c.37, c.55, d.171, b.18, d.81, c.13, b.1, c.97, d.110,
c.53, d.38, c.51, c.111, d.142, b.34, i.12, d.162, b.7, d.113, d.26, e.24, b.36, c.84, d.202, g.3, d.70, g.37, g.25, b.94