Tableau information
Concept source: d3dmbc_ amino acid (a.a.) range (LEU58)(GLU89)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU58) (GLY63) H1
(VAL68) (SER74) E2
(ASP78) (GLU89) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -133.6° E2
E3 -60.2° 148.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ecya_ : (GLY102) (GLU134) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1xnea_ : (PRO30) (GLU53) [view usage] : b.122.1.6 |PUA domain-like |PUA domain-like |ProFAR isomerase associated domain |Hypothetical protein PF0470 |Pyrococcus furiosus [TaxId: 2261]
d1w9aa_ : (ALA56) (GLY84) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv1155 |Mycobacterium tuberculosis [TaxId: 1773]
d1jg1a_ : (LYS57) (HIS78) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Pyrococcus furiosus [TaxId: 2261]
d1lcya1 : (GLU292) (GLU325) [view usage] : b.36.1.4 |PDZ domain-like |PDZ domain-like |HtrA-like serine proteases |Mitochondrial serine protease HtrA2 |Human (Homo sapiens) [TaxId: 9606]
d3tqqa2 : (SER218) (TRP247) [view usage] : b.46.1.0 |FMT C-terminal domain-like |FMT C-terminal domain-like |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d1nxca_ : (PHE607) (ARG644) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d2zs7a_ : (ASN284) (ARG310) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1kkea1 : (VAL254) (ASP275) [view usage] : b.83.1.2 |Triple beta-spiral |Fibre shaft of virus attachment proteins |Reovirus attachment protein sigma 1 |Reovirus attachment protein sigma 1 |Reovirus [TaxId: 10891]
d2a4wa_ : (PRO30) (THR53) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |automated matches |Streptomyces caespitosus [TaxId: 53502]
d2i6va1 : (PRO272) (PHE305) [view usage] : b.36.1.5 |PDZ domain-like |PDZ domain-like |EpsC C-terminal domain-like |General secretion pathway protein C, EpsC |Vibrio cholerae [TaxId: 666]
d1k12a_ : (GLU32) (LEU66) [view usage] : b.18.1.15 |Galactose-binding domain-like |Galactose-binding domain-like |Fucose binding lectin |Fucose binding lectin |European eel (Anguilla anguilla) [TaxId: 7936]
d2d0vi_ : (ASN1) (SER29) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |automated matches |Hyphomicrobium denitrificans [TaxId: 53399]
d3zzfd_ : (ASN330) (ARG349) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1te0a1 : (SER314) (GLU350) [view usage] : b.36.1.4 |PDZ domain-like |PDZ domain-like |HtrA-like serine proteases |Stress sensor protease DegS, C-terminal domain |Escherichia coli [TaxId: 562]
d1maaa_ : (THR466) (ARG522) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Mouse (Mus musculus) [TaxId: 10090]
d1esma_ : (ARG155) (GLN192) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Pantothenate kinase PanK |Escherichia coli [TaxId: 562]
d1xxoa_ : (ALA56) (GLY84) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv1155 |Mycobacterium tuberculosis [TaxId: 1773]
d1pixa3 : (LYS339) (GLY366) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Glutaconyl-CoA decarboxylase A subunit |Acidaminococcus fermentans [TaxId: 905]
d3jusa_ : (GLU452) (LYS499) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y6tf_ : (LEU128) (ALA159) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d2z3ka_ : (SER34) (TRP59) [view usage] : d.108.1.6 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |LFTR-like |Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) |Escherichia coli [TaxId: 562]
d4ki0g_ : (ASP57) (PRO77) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalG |Escherichia coli [TaxId: 562]
d2btwa1 : (ASN148) (ALA189) [view usage] : d.3.1.14 |Cysteine proteinases |Cysteine proteinases |Phytochelatin synthase |Primitive phytochelatin synthase |Nostoc sp. PCC 7120 [TaxId: 103690]
d4f7wd_ : (LEU1291) (ARG1315) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
d2nt8a_ : (LYS6) (TYR22) [view usage] : a.25.2.0 |Ferritin-like |Cobalamin adenosyltransferase-like |automated matches |automated matches |Lactobacillus reuteri [TaxId: 1598]
d1ufna_ : (PHE29) (THR51) [view usage] : d.217.1.1 |SAND domain-like |SAND domain-like |SAND domain |Putative nuclear protein homolog 5830484a20rik |Mouse (Mus musculus) [TaxId: 10090]
d1tmoa2 : (TRP411) (TYR431) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Trimethylamine N-oxide reductase |Shewanella massilia [TaxId: 76854]
d2i4sb_ : (MSE275) (PHE305) [view usage] : b.36.1.5 |PDZ domain-like |PDZ domain-like |EpsC C-terminal domain-like |General secretion pathway protein C, EpsC |Vibrio cholerae [TaxId: 666]
d1xx9c_ : (GLY102) (ALA132) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d3ci4a_ : (LYS6) (TYR22) [view usage] : a.25.2.0 |Ferritin-like |Cobalamin adenosyltransferase-like |automated matches |automated matches |Lactobacillus reuteri [TaxId: 1598]
d3swnd_ : (LEU6) (GLY31) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Schizosaccharomyces pombe [TaxId: 284812]
d3lmba_ : (ASP111) (LYS163) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 194439]
d2j0xb1 : (LEU265) (ASN291) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Escherichia coli [TaxId: 562]
d1op4a_ : (SER92) (SER122) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |N-cadherin (neural) |Mouse (Mus musculus) [TaxId: 10090]
d2arza1 : (GLN56) (GLN93) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein PA4388 |Pseudomonas aeruginosa [TaxId: 287]
d2y6tg_ : (GLY129) (ASP162) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d1sva6_ : (GLY31) (PRO94) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |Polyomavirus coat proteins |Simian virus 40, Sv40 [TaxId: 10633]
d1tejb_ : (GLY23) (ILE53) [view usage] : g.20.1.1 |Blood coagulation inhibitor (disintegrin) |Blood coagulation inhibitor (disintegrin) |Blood coagulation inhibitor (disintegrin) |Schistatin |Saw-scaled viper (Echis carinatus), different isoforms [TaxId: 40353]
d1cl3a_ : (PRO36) (GLN67) [view usage] : b.54.1.1 |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Human (Homo sapiens) [TaxId: 9606]
d4m78c_ : (THR3) (GLY28) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1ib8a1 : (LYS96) (ALA127) [view usage] : b.38.2.1 |Sm-like fold |YhbC-like, C-terminal domain |YhbC-like, C-terminal domain |Hypothetical protein SP14.3 (SP0552) |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2jhba_ : (GLU41) (PHE71) [view usage] : b.54.1.1 |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Mouse (Mus musculus) [TaxId: 10090]
d3ci1a_ : (LYS6) (TYR22) [view usage] : a.25.2.0 |Ferritin-like |Cobalamin adenosyltransferase-like |automated matches |automated matches |Lactobacillus reuteri [TaxId: 1598]
d1gkla_ : (MET955) (TYR983) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Feruloyl esterase domain of the cellulosomal xylanase y |Clostridium thermocellum [TaxId: 1515]
d1hcub_ : (PHE452) (SER494) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d3gaja_ : (LYS6) (TYR22) [view usage] : a.25.2.0 |Ferritin-like |Cobalamin adenosyltransferase-like |automated matches |automated matches |Lactobacillus reuteri [TaxId: 1598]
d1xxdc_ : (GLY102) (GLU134) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d3ckma1 : (GLN529) (THR552) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |YraM C-terminal domain |Haemophilus influenzae [TaxId: 727]
d2kz1b1 : (ASP70) (TRP100) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interferon-alpha/beta receptor beta chain |Human (Homo sapiens) [TaxId: 9606]
d3m7va2 : (PHE148) (HIS173) [view usage] : d.327.1.1 |DeoB insert domain-like |DeoB insert domain-like |DeoB insert domain-like |Phosphopentomutase DeoB |Streptococcus mutans [TaxId: 1309]
d1hcud_ : (PHE452) (SER494) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1p0se_ : (GLY102) (ALA132) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d3lbfa_ : (GLU41) (PRO61) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4dwoa_ : (PRO89) (GLU118) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d3ussa_ : (PRO49) (PRO82) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3ld6b_ : (GLU452) (LYS499) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4niye_ : (GLY102) (ALA132) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1iyjb1 : (GLU2501) (SER2520) [view usage] : a.170.1.1 |BRCA2 helical domain |BRCA2 helical domain |BRCA2 helical domain |BRCA2 helical domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1uaia_ : (THR41) (THR79) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Polyguluronate lyase |Corynebacterium sp. ALY-1 [TaxId: 101519]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, b.82, c.69, c.81, a.104, c.108, b.29, a.102, c.66, c.93, c.14, c.37, b.18, b.121, d.3, d.32, b.122, b.1, b.45, d.108,
c.73, a.25, d.38, b.38, b.36, b.16, f.58, b.83, a.170, b.54, b.46, d.327, g.20, d.217