Tableau information
Concept source: d3up7a_ amino acid (a.a.) range (GLU175)(GLU211)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU175) (LEU188) H1
(LEU194) (ALA203) E2
(ARG205) (GLU211) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -139.5° E2
E3 22.8° 160.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ejaa_ : (ASP75) (TRP99) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2jbwa1 : (ARG90) (PRO132) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d2i89d_ : (LEU9) (THR33) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2m33a_ : (THR13) (LYS39) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2gg6a_ : (ASP201) (GLU229) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d2bdwa_ : (ALA51) (ASP90) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3nerb_ : (ARG8) (VAL32) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zlfa2 : (PHE175) (LYS211) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d1u2vd2 : (SER123) (GLU155) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC2 (34 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d2i96a_ : (THR33) (LYS59) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p2ea1 : (VAL80) (LYS97) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella frigidimarina [TaxId: 56812]
d2z6bd1 : (THR165) (ASP199) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate structural protein gp27 |Bacteriophage T4 [TaxId: 10665]
d1rkib_ : (TYR26) (SER45) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d1m59a_ : (THR8) (THR33) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b5 |Cow (Bos taurus) [TaxId: 9913]
d3k6ua_ : (MET182) (ALA210) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Methanosarcina acetivorans [TaxId: 2214]
d2ganb_ : (GLU151) (PHE176) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PH0736 |Pyrococcus horikoshii [TaxId: 53953]
d1maia_ : (LYS86) (ALA112) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Phospholipase C delta-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1f51b_ : (ASP358) (ASP392) [view usage] : d.123.1.1 |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Bacillus subtilis [TaxId: 1423]
d2gbca1 : (PRO288) (ARG315) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3c3ya_ : (LYS200) (ARG234) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Mesembryanthemum crystallinum [TaxId: 3544]
d3iwzc2 : (SER200) (GLY228) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d4oa5e_ : (SER180) (ILE215) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
d3cg3a_ : (PRO175) (GLU199) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d4b8na_ : (SER17) (LEU41) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Ostreococcus tauri virus 2 [TaxId: 696472]
d1bxsa_ : (ASP346) (ASP388) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Sheep (Ovis aries) [TaxId: 9940]
d1un9a4 : (LEU12) (ARG43) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |Dihydroxyacetone kinase |Citrobacter freundii [TaxId: 546]
d4hilb_ : (ARG8) (ILE32) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3laic_ : (LEU91) (SER133) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1xvxa_ : (GLN258) (ASN278) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Yersinia enterocolitica, YfuA [TaxId: 630]
d4pyna_ : (PRO220) (TYR255) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1k28d1 : (THR165) (ASP199) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate structural protein gp27 |Bacteriophage T4 [TaxId: 10665]
d2c1ca1 : (GLU14) (SER53) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase B |Corn earworm (Helicoverpa zea) [TaxId: 7113]
d1cxya_ : (THR11) (LEU35) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b558 |Ectothiorhodospira vacuolata [TaxId: 1054]
d2ejab_ : (ASP75) (TRP99) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d1jjia_ : (ARG30) (GLN75) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Carboxylesterase |Archaeoglobus fulgidus [TaxId: 2234]
d1sr8a_ : (ASP20) (GLY41) [view usage] : e.54.1.1 |CbiD-like |CbiD-like |CbiD-like |Cobalamin biosynthesis protein CbiD |Archaeoglobus fulgidus [TaxId: 2234]
d3v38a_ : (TYR12) (SER50) [view usage] : c.56.5.2 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Carboxypeptidase T |Carboxypeptidase T |Thermoactinomyces vulgaris [TaxId: 2026]
d2z02a_ : (GLY51) (ALA87) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d4dglc_ : (LYS76) (GLU114) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3u81a_ : (PRO177) (TYR212) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1un8a4 : (LEU12) (ARG43) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |Dihydroxyacetone kinase |Citrobacter freundii [TaxId: 546]
d2an9a_ : (ASN58) (THR84) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase |Escherichia coli [TaxId: 562]
d1k8kd2 : (SER123) (GLU155) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC2 (34 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d4ropa2 : (SER178) (ASN215) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Synechococcus elongatus [TaxId: 269084]
d3laha_ : (LEU91) (LYS134) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1pytb_ : (THR14) (SER53) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d1euea_ : (ARG8) (ILE32) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b5 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2i89a_ : (ARG8) (THR33) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3s11b_ : (GLU103) (HIS142) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 11320]
d1i5da_ : (MET507) (ARG536) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d3ks0a_ : (PRO13) (THR37) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2qora_ : (LYS58) (LEU84) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
d1esnb_ : (LYS267) (ARG315) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Pantothenate kinase PanK |Escherichia coli [TaxId: 562]
d3wlxb_ : (SER231) (ARG281) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1ttea2 : (LYS5) (LEU40) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]
d4juea_ : (SER2) (GLY47) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Plasmodium falciparum [TaxId: 36329]
d2gg4a_ : (MET130) (LYS160) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d2gg4a_ : (ASP201) (GLU229) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1u02a_ : (GLY81) (LEU119) [view usage] : c.108.1.15 |HAD-like |HAD-like |Trehalose-phosphatase |Trehalose-6-phosphate phosphatase related protein |Thermoplasma acidophilum [TaxId: 2303]
d1icca_ : (ARG8) (THR33) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b5 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3iqba_ : (LEU91) (LYS134) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1nsaa1 : (ASN14) (GLY53) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase B |Pig (Sus scrofa) [TaxId: 9823]
d3tvta2 : (ARG837) (SER863) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1hkoa_ : (THR12) (THR37) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b5 |Cow (Bos taurus) [TaxId: 9913]
d3ozzb_ : (THR8) (ILE32) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3zqaa_ : (PHE331) (ASP376) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2onke1 : (THR174) (SER201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d1jexa_ : (THR8) (ASP31) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b5 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3d9ya_ : (SER39) (ILE69) [view usage] : d.110.1.0 |Profilin-like |Profilin (actin-binding protein) |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1zdxa1 : (PRO92) (PRO116) [view usage] : b.167.1.1 |FimD N-terminal domain-like |FimD N-terminal domain-like |Usher N-domain |Outer membrane usher protein FimD |Escherichia coli [TaxId: 562]
d2ggda_ : (ASP201) (GLU229) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1zg7c_ : (ASN14) (GLY53) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d3lcsa_ : (GLU1158) (GLU1197) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ti2b2 : (CYS71) (ASP95) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Transhydroxylase beta subunit, BthL, N-terminal domain |Pelobacter acidigallici [TaxId: 35816]
d3fkdb_ : (ILE250) (LYS286) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 837]
d1x3xa_ : (THR7) (MET31) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Pig roundworm (Ascaris suum) [TaxId: 6253]
d1d9ya_ : (SER77) (ASP108) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
d2onkj_ : (THR174) (PRO200) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d3uj2a2 : (SER176) (ASP213) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Anaerostipes caccae [TaxId: 411490]
d3zlfc2 : (PHE175) (LYS211) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d3bwud_ : (PRO92) (ILE115) [view usage] : b.167.1.1 |FimD N-terminal domain-like |FimD N-terminal domain-like |Usher N-domain |Outer membrane usher protein FimD |Escherichia coli [TaxId: 562]
d4p7fa_ : (THR219) (VAL254) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.1, c.67, c.69, c.94, d.68, d.58, c.108, c.82, c.56, c.66, d.122, d.144, c.37, d.108, d.20, d.110, d.143, d.278, b.55,
a.4, h.3, a.138, d.120, c.119, d.198, d.308, b.106, e.54, d.123, b.167