Tableau information
Concept source: d1jnya2 amino acid (a.a.) range (PHE404)(VAL425)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE404) (GLY408) H1
(ARG409) (MET415) E2
(VAL419) (VAL425) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -26.6° E2
E3 142.2° 153.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jhlf_ : (CYS89) (PHE129) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4e4ga_ : (GLY112) (PRO137) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1uwbb_ : (ASP121) (VAL148) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2coza1 : (ASP27) (PRO94) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Centrosome-associated protein 350 |Human (Homo sapiens) [TaxId: 9606]
d1j5ob_ : (ASP121) (VAL148) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1a9na_ : (THR5) (LEU26) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d4c2xa1 : (ALA166) (SER193) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2uwaa_ : (TYR88) (GLU117) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Tropaeolum majus [TaxId: 4020]
d3uk0a_ : (ASP367) (LYS385) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316057]
d2p0wa_ : (ASN28) (TYR55) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Human (Homo sapiens) [TaxId: 9606]
d4m0kb_ : (LEU6) (ILE29) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d1m3db2 : (ARG169) (TYR184) [view usage] : d.169.1.6 |C-type lectin-like |C-type lectin-like |Noncollagenous (NC1) domain of collagen IV |Noncollagenous (NC1) domain of collagen IV |Cow (Bos taurus) [TaxId: 9913]
d1s6ra_ : (PRO192) (VAL211) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]
d1ddha1 : (LYS253) (TRP274) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d1ytma2 : (SER369) (THR398) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d1g8ja2 : (THR66) (VAL86) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1kood_ : (GLU207) (LEU229) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d4gidc_ : (PRO324) (LEU349) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1zunb2 : (ASN410) (ALA434) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain |Pseudomonas syringae pv. tomato [TaxId: 323]
d2fm8a1 : (ILE6) (VAL47) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Surface presentation of antigens protein SpaK (Spa15) |Salmonella typhimurium [TaxId: 90371]
d1fx0a2 : (LYS25) (GLY44) [view usage] : b.49.1.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |N-terminal domain of alpha and beta subunits of F1 ATP synthase |N-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase alpha subunit, domain 1 |Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
d2dsyd_ : (THR8) (ILE33) [view usage] : d.304.1.2 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA0281-like |automated matches |Thermus thermophilus [TaxId: 274]
d1xqda_ : (THR284) (ASN315) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-NOR, nitric reductase |Fungus (Fusarium oxysporum) [TaxId: 5507]
d1a9nc_ : (THR5) (LEU26) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d4m0kc_ : (ASN2) (ILE29) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d4l0ga_ : (GLU445) (PRO466) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |automated matches |Caldicellulosiruptor bescii [TaxId: 521460]
d1p9ka_ : (ALA44) (LYS58) [view usage] : d.66.1.6 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |YbcJ-like |Hypothetical protein YbcJ |Escherichia coli [TaxId: 562]
d1jcga2 : (SER216) (GLY243) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Prokaryotic actin homolog MreB |Thermotoga maritima [TaxId: 2336]
d3vlka1 : (SER347) (LEU369) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Haloarcula marismortui [TaxId: 272569]
d2x06a_ : (LYS275) (ILE302) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase |Methanococcus jannaschii [TaxId: 2190]
d1r7la_ : (LYS2) (LEU36) [view usage] : d.277.1.1 |Bacillus phage protein |Bacillus phage protein |Bacillus phage protein |Bacillus phage protein |Bacillus cereus [TaxId: 1396]
d1pp0b_ : (PRO1014) (PHE1041) [view usage] : d.103.1.1 |CytB endotoxin-like |CytB endotoxin-like |CytB endotoxin-like |Volvatoxin A2 |Volvariella volvacea, different isoforms [TaxId: 36659]
d1f9oa_ : (ASP439) (PRO460) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium cellulolyticum [TaxId: 1521]
d1m8q0_ : (ASP1) (PHE21) [view usage] : i.15.1.1 |Muscle protein complexes |Muscle protein complexes |Muscle protein complexes |Averaged rigor crossbridges from tomograms of insect flight muscle |Chicken (Gallus gallus) and Rabbit (Oryctolagus cuniculus) [TaxId: 9031]
d3l20a_ : (LYS49) (ASP72) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Staphylococcus aureus [TaxId: 367830]
d1z9ha2 : (LEU182) (PHE205) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Microsomal prostaglandin E synthase-2 |Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
d4m0ka_ : (GLU7) (ILE29) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d2yiag_ : (GLY539) (LEU578) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Infectious pancreatic necrosis virus [TaxId: 11002]
d4knab_ : (VAL106) (PRO135) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2wobc_ : (GLY72) (SER97) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d3orha_ : (TRP20) (LEU37) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d1jlxa2 : (ASP195) (SER214) [view usage] : b.42.3.1 |beta-Trefoil |Agglutinin |Agglutinin |Agglutinin |Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]
d4e4gc_ : (GLY112) (PRO137) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1reqd1 : (THR54) (PRO74) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1f9da_ : (ASP439) (PRO460) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium cellulolyticum [TaxId: 1521]
d1djna1 : (PRO4) (ARG21) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Trimethylamine dehydrogenase, N-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d4m1gl1 : (SER30) (ILE49) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2jt4a_ : (SER39) (LEU55) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jyaa_ : (SER3) (GLU40) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d1jyab_ : (PHE4) (GLU40) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia pestis [TaxId: 632]
d1lsha2 : (ASP91) (PRO116) [view usage] : f.7.1.1 |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d2x89a_ : (VAL64) (ASP84) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d3h1hn1 : (THR3) (GLU28) [view usage] : d.185.1.0 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1n5ba_ : (SER3) (GLU40) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |YopE chaperone SycE |Yersinia enterocolitica [TaxId: 630]
d2dsya1 : (GLY5) (GLU32) [view usage] : d.304.1.2 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA0281-like |Hypothetical protein TTHA0281 |Thermus thermophilus [TaxId: 274]
d1uxva_ : (LEU6) (ALA24) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
d1djqa1 : (ASP3) (ARG21) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Trimethylamine dehydrogenase, N-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d1nbfa_ : (ILE360) (PHE395) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |Human (Homo sapiens) [TaxId: 9606]
d4e4gb_ : (GLY112) (PRO137) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3is9a1 : (ASP121) (TYR146) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1p35a_ : (GLU208) (LYS237) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1hnib_ : (ASP121) (VAL148) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1orea_ : (LEU6) (ILE29) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Human (Homo sapiens) [TaxId: 9606]
d1ii2a1 : (THR348) (ILE378) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Trypanosoma cruzi [TaxId: 5693]
d1mm4a_ : (MET1) (GLU63) [view usage] : f.4.1.2 |Transmembrane beta-barrels |OMPA-like |Outer membrane enzyme PagP |Outer membrane enzyme PagP |Escherichia coli [TaxId: 562]
d2xh8a_ : (LEU107) (HIS124) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1jcea2 : (SER216) (GLY243) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Prokaryotic actin homolog MreB |Thermotoga maritima [TaxId: 2336]
d1c0ma2 : (ALA72) (GLN92) [view usage] : c.55.3.2 |Ribonuclease H-like motif |Ribonuclease H-like |Retroviral integrase, catalytic domain |Retroviral integrase, catalytic domain |Rous sarcoma virus RSV [TaxId: 11886]
d1l5aa1 : (ILE49) (PHE67) [view usage] : c.43.1.2 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |NRPS condensation domain (amide synthase) |VibH |Vibrio cholerae [TaxId: 666]
d2b1xa2 : (ASP233) (PRO256) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Rhodococcus sp. ncimb12038 [TaxId: 92694]
d1xu6a_ : (GLU378) (LEU406) [view usage] : g.16.3.1 |Trefoil/Plexin domain-like |Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain |Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain |Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain |Trypanosoma brucei brucei [TaxId: 5702]
d4lzab_ : (LEU1) (THR25) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d1bcca1 : (ALA5) (GLU28) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 1 |Chicken (Gallus gallus) [TaxId: 9031]
d2f2fa1 : (PHE110) (ASN131) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Cytolethal distending toxin subunit A |Actinobacillus actinomycetemcomitans [TaxId: 714]
d2j3ga_ : (CYS80) (PHE120) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, c.10, c.81, a.104, b.29, c.82, c.92, a.102, c.66, c.93, a.93, b.50, d.129, f.4, c.47, d.185, c.55, i.15,
d.171, d.169, d.3, b.2, d.32, b.1, d.108, c.43, b.42, c.122, c.61, b.34, c.91, b.49, d.198, b.44, f.7, d.277, d.66, d.103,
d.304, b.28, g.16