Tableau information
Concept source: d2wm1a_ amino acid (a.a.) range (ASP16)(LYS41)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP16) (PHE21) H1
(TRP26) (HIS31) E2
(GLY35) (LYS41) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 146.8° E2
E3 -40.9° 161.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3il7a2 : (SER273) (THR308) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4qxqa_ : (ASN211) (ASN242) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d4kzoa_ : (GLN277) (ALA307) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4drxa1 : (ILE42) (PRO63) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d4oltb_ : (SER207) (LEU239) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |automated matches |Pseudomonas sp. [TaxId: 878476]
d1osya_ : (SER1) (PRO39) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Golden needle mushroom (Flammulina velutipes) [TaxId: 38945]
d1cg1a_ : (ALA394) (LEU425) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1ovba_ : (THR208) (PRO234) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Duck (Anas platyrhynchos) [TaxId: 8839]
d1tw8b_ : (SER144) (GLU189) [view usage] : c.52.1.19 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease HincII |Restriction endonuclease HincII |Haemophilus influenzae [TaxId: 727]
d1hzpa2 : (ILE280) (VAL314) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Mycobacterium tuberculosis [TaxId: 1773]
d1ynya2 : (PHE75) (LYS102) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |D-hydantoinase |Bacillus sp. AR9 [TaxId: 301298]
d2nvua_ : (HIS491) (THR531) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1l3wa1 : (SER26) (GLU54) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |C-cadherin ectodomain |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1xo8a_ : (TYR98) (GLY140) [view usage] : b.1.25.1 |Immunoglobulin-like beta-sandwich |LEA14-like |LEA14-like |Putative dessication related protein LEA14 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3dblf_ : (ALA293) (LYS340) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d4fofa_ : (SER435) (VAL473) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1cg3a_ : (ALA394) (LEU425) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d3dbhb_ : (ALA293) (GLU341) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2b0ta_ : (ASN540) (GLY577) [view usage] : c.77.1.2 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Monomeric isocitrate dehydrogenase |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d2y40b_ : (ASN237) (PRO271) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d2gfqb_ : (LEU59) (LEU89) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d1q55a_ : (SER26) (GLU54) [view usage] : i.20.1.1 |Ep-cadherin |Ep-cadherin |Ep-cadherin |Ep-cadherin |Mouse (Mus musculus) [TaxId: 10090]
d3f3ha_ : (SER2) (PRO40) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma lucidum [TaxId: 5315]
d1osyb_ : (SER1) (PRO39) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |Golden needle mushroom (Flammulina velutipes) [TaxId: 38945]
d3ov2c2 : (VAL342) (PRO388) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Curcuma longa [TaxId: 136217]
d1go4d_ : (ASP58) (PHE102) [view usage] : d.135.1.1 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |Human (Homo sapiens) [TaxId: 9606]
d1u6ea2 : (ILE280) (VAL314) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Mycobacterium tuberculosis [TaxId: 1773]
d2qnya2 : (ILE280) (VAL314) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Mycobacterium tuberculosis [TaxId: 1773]
d3udoa_ : (ASN241) (PRO276) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Campylobacter jejuni [TaxId: 197]
d3dblb_ : (ALA293) (LYS340) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1y3ta1 : (ALA210) (TYR238) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |Hypothetical protein YxaG |Bacillus subtilis [TaxId: 1423]
d2d30a1 : (PHE60) (PRO85) [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3zpyb_ : (SER201) (ASP230) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d3dbrd_ : (ALA293) (LYS340) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1s04a_ : (ASP28) (ARG50) [view usage] : b.122.1.6 |PUA domain-like |PUA domain-like |ProFAR isomerase associated domain |Hypothetical protein PF0455 |Pyrococcus furiosus [TaxId: 2261]
d2x5la_ : (ALA380) (ASP424) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2ea9a_ : (THR11) (GLY45) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YfjZ |Escherichia coli [TaxId: 562]
d4obca_ : (LEU425) (SER453) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis c virus jfh-1 [TaxId: 356411]
d1poqa_ : (TYR86) (THR115) [view usage] : b.135.1.1 |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Yersinia pseudotuberculosis [TaxId: 633]
d3iw0a_ : (ALA380) (THR426) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3fn8a2 : (PHE103) (THR127) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d1xarb_ : (GLU253) (SER283) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |DC-SIGNR (DC-SIGN related receptor) |Human (Homo sapiens) [TaxId: 9606]
d1feud_ : (LEU41) (PRO68) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
d3q4ta_ : (LEU238) (ALA268) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f0oa2 : (PHE103) (THR127) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d2fona1 : (PRO250) (ILE272) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d1lvwa_ : (GLY93) (GLY113) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1t3ta5 : (THR661) (ARG700) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |FGAM synthase PurL, PurM-like module, N1 and N2 domains |Salmonella typhimurium [TaxId: 90371]
d1twba_ : (PRO10) (ASN53) [view usage] : b.136.1.1 |SspB-like |SspB-like |Stringent starvation protein B, SspB |Stringent starvation protein B, SspB |Haemophilus influenzae [TaxId: 727]
d1gk8i_ : (MET87) (LEU122) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1yovc_ : (THR492) (THR531) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d2qfyb_ : (ASN273) (ALA309) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1adea_ : (GLN393) (LEU425) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1aihb_ : (THR215) (PRO238) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase |Bacteriophage HP1 [TaxId: 10690]
d2x0na2 : (GLY226) (ARG265) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Trypanosoma brucei brucei, glycosome [TaxId: 5702]
d3gzna_ : (HIS498) (THR538) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d3vscb_ : (PRO44) (THR67) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Aeropyrum pernix [TaxId: 272557]
d1hqca2 : (GLN105) (GLU135) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d1p35a_ : (CYS137) (GLU170) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d3dbrb_ : (ALA293) (LYS340) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1v06a_ : (PRO314) (PRO337) [view usage] : b.145.1.0 |AXH domain |AXH domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3qrba1 : (SER26) (GLU54) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d4ba4a_ : (GLY273) (GLY303) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d1b7go2 : (CYS139) (PRO186) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Sulfolobus solfataricus [TaxId: 2287]
d2nvub1 : (SER2294) (PHE2335) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d3sbfa2 : (GLY342) (ILE364) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Vibrionales bacterium [TaxId: 391574]
d1rf8a_ : (ILE138) (LYS168) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dbhf_ : (SER294) (LYS340) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1feua_ : (LEU41) (PRO68) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.82, c.67, c.94, a.104, c.68, c.79, b.29, c.56, c.77, d.144, c.37, e.6, d.2, c.95, d.169, d.81, c.32, b.122,
b.1, c.97, d.110, c.111, d.79, c.52, b.145, b.136, d.73, d.86, i.20, d.387, b.135, b.28, b.53, d.163, d.135, d.357