Protein Concepts Dictionary

Tableau information

Concept source:  d1enoa_  amino acid (a.a.) range (THR115)(GLY140)

nSSEs in this Concept: 3

String of secondary struct.elems. (SSEs) defining this concept: HEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR115)  (ASP126) H1
	  (GLY128)  (ILE132) E2
	  (ILE132)  (GLY140) E3

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                   
E2      112.3°   E2            
E3      156.8°  -69.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3wp4a_ :    (THR71)   (ASN91)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
 d1enoa_ :   (THR115)  (GLY140)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Oil seed rape (Brassica napus) [TaxId: 3708]
 d2df7l_ :    (ASN91)  (GLY115)   [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
 d4nc2b_ :   (TYR105)  (SER122)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Llama (Lama glama) [TaxId: 9844]
 d2gsye_ :    (LEU92)  (ARG109)   [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
 d2df7b_ :    (ASN91)  (ARG109)   [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
 d2qtra_ :   (ASN118)  (GLU148)   [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d4w6xb_ :   (HIS108)  (SER125)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
 d3wp6a_ :    (THR71)   (ASN91)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
 d3vifa_ :   (SER352)  (ALA371)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
 d2bmib_ :    (ASP57)   (HIS82)   [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Bacteroides fragilis [TaxId: 817]
 d3j38g_ :    (GLY42)   (GLN59)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
 d3ai0a_ :   (SER352)  (ALA371)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
 d4pxhe_ :   (GLY359)  (SER392)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
 d2x3df_ :    (PHE60)   (GLY83)   [view usage] : d.58.61.0 |Ferredoxin-like |MTH889-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
 d1n7za_ :    (SER64)   (ALA88)   [view usage] : b.127.1.1 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Bacteriophage T4 [TaxId: 10665]
 d1mvma_ :   (GLN124)  (ILE147)   [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Murine minute virus, strain i [TaxId: 10794]
 d4aq1b_ :   (SER107)  (SER124)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
 d3u5cg_ :    (GLY42)   (GLN59)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
 d2x3da_ :    (PHE60)   (GLY83)   [view usage] : d.58.61.0 |Ferredoxin-like |MTH889-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
 d2hrua1 :   (ASP124)  (SER141)   [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
 d2wqta_ :    (PRO66)   (ASP90)   [view usage] : d.177.1.1 |FAH |FAH |FAH |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d2r49a_ :   (GLY124)  (SER145)   [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Fibrobacter succinogenes [TaxId: 833]
 d4ixlb_ :    (THR58)   (GLY77)   [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus sp [TaxId: 1409]
 d3mfha2 :   (GLN469)  (ASP510)   [view usage] : d.240.1.0 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3ahza_ :   (SER352)  (ALA371)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
 d1cwua_ :   (THR115)  (GLU142)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Oil seed rape (Brassica napus) [TaxId: 3708]
 d2vdca2 :   (THR918)  (PRO945)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Alpha subunit of glutamate synthase, central and FMN domains |Azospirillum brasilense [TaxId: 192]
 d2df7a1 :    (ASN91)  (GLY115)   [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |Birnavirus VP2 |Infectious bursal disease virus [TaxId: 10995]
 d1wcdj1 :    (ASN91)  (ARG109)   [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |Birnavirus VP2 |Infectious bursal disease virus [TaxId: 10995]
 d1axja_ :    (GLY95)  (GLN120)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1,   a.104,     c.2,    d.58,     i.1,    b.29,    c.26,   d.157,   b.121,     b.1,    b.45,   d.177,    d.79,   d.240,   b.127