Tableau information
Concept source: d2cs5a1 amino acid (a.a.) range (THR79)(GLU113)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR79) (HIS94) H1
(GLU97) (TYR108) E2
(ASP109) (GLU113) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -131.2° E2
E3 -120.7° 48.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1tvnb_ : (THR120) (GLN138) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Pseudoalteromonas haloplanktis [TaxId: 228]
d2gu2a1 : (ALA188) (TYR230) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |Aspartoacylase AspA |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2mspa_ : (ARG106) (LEU126) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |Major sperm protein, MSP |Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253]
d1mspb_ : (ARG106) (LEU126) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |Major sperm protein, MSP |Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253]
d3ffkd1 : (HIS29) (GLY65) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Human (Homo sapiens) [TaxId: 9606]
d1si7a_ : (ASN23) (GLU40) [view usage] : d.265.1.4 |Pseudouridine synthase |Pseudouridine synthase |tRNA pseudouridine synthase TruD |tRNA pseudouridine synthase TruD |Escherichia coli [TaxId: 562]
d1k3ca1 : (PRO418) (GLY445) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d2vsuc_ : (PRO83) (GLY119) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
d1byfa_ : (SER83) (GLU122) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Lectin TC14 |Tunicate (Polyandrocarpa misakiensis) [TaxId: 7723]
d1y12c_ : (THR66) (LYS88) [view usage] : b.157.1.1 |Hcp1-like |Hcp1-like |Hcp1-like |Hemolysin-corregulated protein 1, Hcp1 |Pseudomonas aeruginosa [TaxId: 287]
d1pgw21 : (ALA58) (PRO81) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d2yivx_ : (LEU379) (VAL404) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1j72a1 : (PRO13) (GLY45) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Macrophage capping protein Cap G |Human (Homo sapiens) [TaxId: 9606]
d1egza_ : (PHE113) (GLN136) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Erwinia chrysanthemi [TaxId: 556]
d1vkda_ : (TRP207) (SER223) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d4k00b_ : (SER44) (PHE65) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Synechocystis sp. [TaxId: 1111708]
d2fz6a_ : (ASP40) (LEU68) [view usage] : b.138.1.1 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |automated matches |Hypocrea jecorina [TaxId: 51453]
d2hxda_ : (ARG117) (ALA136) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Bifunctional dCTP deaminase/dUTPase |Methanococcus jannaschii [TaxId: 2190]
d2koja_ : (GLN524) (MET556) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4mrib_ : (ALA189) (TYR231) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2tmpa_ : (GLN9) (VAL24) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d3uqys_ : (GLY53) (GLY82) [view usage] : e.19.1.0 |HydA/Nqo6-like |HydA/Nqo6-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1h5va_ : (GLU124) (SER143) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Bacillus agaradhaerens [TaxId: 76935]
d1feud_ : (PRO108) (LYS127) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
d4kl8s_ : (GLY54) (ALA83) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfomicrobium baculatum [TaxId: 899]
d2l90a_ : (THR102) (ARG122) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Mouse (Mus musculus) [TaxId: 10090]
d2cs5a1 : (THR79) (GLU113) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Tyrosine-protein phosphatase non-receptor type 4, PTPN4 |Human (Homo sapiens) [TaxId: 9606]
d1su6a_ : (LEU379) (VAL404) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1ai2a_ : (GLU87) (GLY108) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |Isocitrate dehydrogenase, ICDH |Escherichia coli [TaxId: 562]
d1qhda2 : (PRO302) (GLU332) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |vp6, the major capsid protein of group A rotavirus |Bovine rotavirus [TaxId: 10927]
d2vpha_ : (THR578) (VAL606) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tvna1 : (THR120) (GLN138) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Pseudoalteromonas haloplanktis [TaxId: 228]
d4qn2a_ : (ARG363) (ASN379) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d2ppva_ : (SER256) (GLU276) [view usage] : c.143.1.0 |CofD-like |CofD-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d3e9la1 : (SER1764) (ILE1790) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d4f7da1 : (GLY89) (THR113) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1mjga_ : (ILE394) (VAL428) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d4k00a_ : (GLN46) (PHE65) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Synechocystis sp. [TaxId: 1111708]
d4neaa1 : (ARG363) (ASN379) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d4p7bc_ : (HIS115) (ASP143) [view usage] : c.56.3.1 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |Salmonella enterica [TaxId: 99287]
d1vkde_ : (TRP207) (SER223) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d4jp6a_ : (GLY103) (ASN122) [view usage] : b.52.1.2 |Double psi beta-barrel |Barwin-like endoglucanases |Barwin |automated matches |Papaya (Carica papaya) [TaxId: 3649]
d4qn2b_ : (ARG363) (ASN379) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.19, d.58, c.82, b.67, c.56, c.77, c.14, b.40, c.55, d.169, b.121, b.85, b.1, d.38, b.52, d.109, e.26, c.91, b.43,
e.19, b.36, d.265, c.143, b.138, b.157, b.53