Tableau information
Concept source: d1e3pa3 amino acid (a.a.) range (ASP103)(ASN128)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP103) (SER109) H1
(ILE118) (ILE124) E2
(MET125) (ASN128) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 150.7° E2
E3 129.5° -35.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4dwrb_ : (VAL454) (ALA482) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1acfa_ : (SER1) (THR38) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d1a9na_ : (ASN36) (ASN73) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d1ylib_ : (GLY37) (SER66) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Putative acyl-coa thioester hydrolase HI0827 |Haemophilus influenzae [TaxId: 727]
d2im5a2 : (THR332) (MET356) [view usage] : c.1.17.2 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |Monomeric nicotinate phosphoribosyltransferase C-terminal domain |Nicotinate phosphoribosyltransferase, C-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d1aipc2 : (LYS168) (LEU194) [view usage] : d.43.1.1 |EF-Ts domain-like |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Thermus thermophilus [TaxId: 274]
d3vifa_ : (GLY381) (TYR408) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d3j6vv_ : (GLU140) (VAL158) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d1suva_ : (SER159) (LYS193) [view usage] : i.21.1.1 |Transferrin receptor-transferrin complex |Transferrin receptor-transferrin complex |Transferrin receptor-transferrin complex |Transferrin receptor-transferrin complex |Human (Homo sapiens) [TaxId: 9606]
d3o3fa_ : (PHE83) (LYS122) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |automated matches |Thermotoga maritima [TaxId: 2336]
d3taga2 : (ARG656) (PRO691) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3ldsa2 : (MET659) (PRO691) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3suqa2 : (PRO661) (PRO691) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3pbga_ : (GLU352) (LYS381) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |6-phospho-beta-D-galactosidase, PGAL |Lactococcus lactis [TaxId: 1358]
d1g8fa3 : (GLU460) (GLU486) [view usage] : c.37.1.15 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ATP sulfurylase C-terminal domain |ATP sulfurylase C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1a9nc_ : (ASN36) (ASN73) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d2q3gb_ : (THR62) (SER87) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wu7b2 : (THR83) (TYR111) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d4qp0a_ : (PHE41) (GLY60) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1powa3 : (GLN372) (SER416) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Pyruvate oxidase |Lactobacillus plantarum [TaxId: 1590]
d3vl9a_ : (LEU27) (GLY46) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1a0ka_ : (SER2) (LYS43) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3og2a1 : (ASN212) (TYR260) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d2ifga3 : (GLU83) (LEU122) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |High affinity nerve growth factor receptor, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3tvqa_ : (TRP28) (GLY45) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |Multifunctional enzyme TcmN, cyclase/aromatase domain |Streptomyces glaucescens [TaxId: 1907]
d1ngla_ : (TYR101) (ASN117) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d1tfea_ : (LYS168) (LEU194) [view usage] : d.43.1.1 |EF-Ts domain-like |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Thermus thermophilus [TaxId: 274]
d1b3ka_ : (ARG300) (GLU330) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d1uc2a_ : (VAL454) (GLY481) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Pyrococcus horikoshii [TaxId: 53953]
d2f6ua1 : (GLU1045) (VAL1083) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |(S)-3-O-geranylgeranylglyceryl phosphate synthase |Archaeoglobus fulgidus [TaxId: 2234]
d4rk0b_ : (VAL295) (ARG329) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d1p91a_ : (LEU184) (LEU205) [view usage] : c.66.1.33 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA methyltransferase RlmA |rRNA methyltransferase RlmA |Escherichia coli [TaxId: 562]
d2i6ea1 : (LEU190) (ARG210) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein DR0370 |Deinococcus radiodurans [TaxId: 1299]
d2p3ya1 : (GLY150) (LYS182) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1f2ka_ : (SER1001) (SER1038) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d2hv2a2 : (LEU264) (ILE285) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Hypothetical protein EF1021 |Enterococcus faecalis [TaxId: 1351]
d3p72a_ : (GLY166) (LEU202) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d1e8ca2 : (LYS393) (THR417) [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-N-acetylmuramyl tripeptide synthetase MurE |Escherichia coli [TaxId: 562]
d3ahza_ : (GLY381) (TYR408) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d4m8ua1 : (GLU175) (ASP209) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus subtilis [TaxId: 224308]
d1ejba_ : (LEU112) (MET128) [view usage] : c.16.1.1 |Lumazine synthase |Lumazine synthase |Lumazine synthase |Lumazine synthase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3vlbb_ : (LEU27) (GLY46) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d3kcwa_ : (ASP3) (ARG29) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma microsporum [TaxId: 34462]
d1efub4 : (GLU115) (GLY139) [view usage] : d.43.1.1 |EF-Ts domain-like |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Escherichia coli [TaxId: 562]
d3a2fa2 : (LYS560) (LYS585) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1xcda_ : (GLY234) (LEU270) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Decorin |Cow (Bos taurus) [TaxId: 9913]
d3ljta_ : (HIS304) (ASP323) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wu7a2 : (PRO84) (TYR111) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d3o6va_ : (ASP137) (ASP164) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Vibrio cholerae [TaxId: 243277]
d1j70a3 : (LYS463) (GLU486) [view usage] : c.37.1.15 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ATP sulfurylase C-terminal domain |ATP sulfurylase C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3b8za_ : (HIS304) (VAL320) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.10, c.94, i.1, b.29, c.56, c.66, d.92, c.93, d.129, c.37, c.36, d.104, c.55, b.60, d.14, d.261, b.1, d.108,
d.110, d.38, c.59, c.16, e.1, i.21, b.36, e.65, d.43