Tableau information
Concept source: d1dn2a2 amino acid (a.a.) range (ASP413)(LEU443)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP413) (GLN419) H1
(ASN421) (HIS429) E2
(TYR436) (LEU443) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -95.8° E2
E3 -91.3° 156.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4olqa_ : (THR-7) (LYS20) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Hyphomonas neptunium [TaxId: 228405]
d1vs5s1 : (PRO41) (PHE60) [view usage] : d.28.1.1 |Ribosomal protein S19 |Ribosomal protein S19 |Ribosomal protein S19 |Ribosomal protein S19 |Escherichia coli [TaxId: 562]
d1tula_ : (SER50) (LEU75) [view usage] : b.85.5.1 |beta-clip |Tlp20, baculovirus telokin-like protein |Tlp20, baculovirus telokin-like protein |Tlp20, baculovirus telokin-like protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d4m7ga_ : (LYS107) (SER146) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 1836]
d1vyna_ : (LEU33) (VAL59) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1od2b2 : (VAL1843) (LEU1860) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1g6oa_ : (LYS298) (LYS328) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
d1y5yc_ : (ALA2002) (PRO2029) [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
d1od2a2 : (VAL1843) (LEU1860) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2i32a1 : (PRO85) (GLU116) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Human (Homo sapiens) [TaxId: 9606]
d1gfla_ : (PRO75) (PHE114) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2blna1 : (ALA214) (SER244) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Polymyxin resistance protein ArnA, domain 2 |Escherichia coli [TaxId: 562]
d1u6ia_ : (ASP226) (LYS277) [view usage] : c.127.1.1 |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |Methanopyrus kandleri [TaxId: 2320]
d1ccha_ : (ALA40) (PRO63) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c551 |Pseudomonas stutzeri [TaxId: 316]
d3zowp_ : (THR40) (VAL63) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Nitrosomonas europaea [TaxId: 915]
d1d5ya2 : (THR99) (PRO117) [view usage] : a.4.1.8 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |AraC type transcriptional activator |Rob transcription factor, N-terminal domain |Escherichia coli [TaxId: 562]
d1hk8a_ : (LEU84) (THR101) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d4bwsf_ : (GLY311) (ASN331) [view usage] : d.76.1.1 |GYF/BRK domain-like |GYF domain |GYF domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ioba2 : (MET80) (PRO105) [view usage] : d.3.1.15 |Cysteine proteinases |Cysteine proteinases |CHAP domain |Glutathionylspermidine synthase, amidase domain |Escherichia coli [TaxId: 562]
d2r73b_ : (GLU22) (ASN53) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Trichosurus vulpecula [TaxId: 9337]
d4geva_ : (VAL93) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d1qlec_ : (PRO17) (GLY47) [view usage] : f.25.1.1 |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Bacterial aa3 type cytochrome c oxidase subunit III |Paracoccus denitrificans [TaxId: 266]
d1ekjc_ : (PRO289) (GLY322) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |beta-carbonic anhydrase |Pea (Pisum sativum) [TaxId: 3888]
d3zq3a_ : (VAL31) (GLN62) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1c4re_ : (VAL268) (GLU290) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1zpra_ : (VAL93) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d1sqra_ : (SER31) (LYS56) [view usage] : b.43.3.3 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L35ae |Ribosomal protein L35ae |Pyrococcus furiosus [TaxId: 2261]
d1vcca_ : (THR49) (GLY73) [view usage] : d.121.1.1 |DNA topoisomerase I domain |DNA topoisomerase I domain |Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment |Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment |Vaccinia virus, strain WR [TaxId: 10245]
d2cxxa1 : (ARG31) (PRO52) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |GTP-binding protein engB |Pyrococcus horikoshii [TaxId: 53953]
d1c4rf_ : (VAL268) (VAL288) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4ho4a_ : (ASP139) (GLU159) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d1h79a_ : (ASP83) (THR101) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d4aqpb_ : (PRO573) (LYS590) [view usage] : b.145.1.1 |AXH domain |AXH domain |AXH domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ojlb_ : (ASN202) (GLY227) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d1b1ua_ : (ARG56) (LEU79) [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Trypsin/alpha-amylase inhibitor RBI |Eleusine coracana, seeds [TaxId: 4511]
d4j20a_ : (GLY43) (ALA64) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Chlorobium tepidum [TaxId: 194439]
d2o62a1 : (GLN138) (GLN170) [view usage] : b.60.1.9 |Lipocalins |Lipocalins |All1756-like |Uncharacterized protein All1756 ortholog |Nostoc punctiforme [TaxId: 272131]
d1q3xa1 : (ARG555) (HIS595) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1a6ca2 : (SER212) (SER228) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Nepovirus capsid protein |TRSV (Tobacco ringspot virus) [TaxId: 12282]
d2huea1 : (PRO85) (TYR117) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ekjf_ : (TYR288) (LEU323) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |beta-carbonic anhydrase |Pea (Pisum sativum) [TaxId: 3888]
d2ag9a_ : (PRO131) (ILE164) [view usage] : b.95.1.1 |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Human (Homo sapiens) [TaxId: 9606]
d1ojlc_ : (ASN202) (GLY227) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d1w5ca_ : (VAL35) (SER70) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d1ncea_ : (VAL93) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d2v46s1 : (PRO42) (TYR61) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d1qv9a_ : (ASP226) (LYS277) [view usage] : c.127.1.1 |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) |Methanopyrus kandleri [TaxId: 2320]
d4wz8c2 : (VAL1843) (LEU1860) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2zkqs1 : (LEU86) (GLU106) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d1beaa_ : (ARG56) (ARG79) [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Hageman factor/amylase inhibitor |Maize (Zea mays) [TaxId: 4577]
d1aola_ : (VAL198) (ASN230) [view usage] : b.20.1.1 |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |F-MuLV receptor-binding domain |Friend murine leukemia virus [TaxId: 11795]
d1bq1a_ : (TYR94) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, c.68, b.29, b.47, d.117, c.14, c.37, c.7, b.60, d.14, b.121, d.3, i.5, b.85, b.1, c.53, b.95, b.145, b.34, a.4,
a.3, b.43, c.127, a.52, f.25, d.76, d.22, b.20, b.46, d.121, d.28