Tableau information
Concept source: d3eaja_ amino acid (a.a.) range (GLU55)(GLY79)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU55) (LYS61) H1
(SER65) (GLY71) E2
(VAL73) (GLY79) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -78.5° E2
E3 -111.4° 142.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pvia_ : (PRO88) (GLU116) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d1v5ea1 : (TRP262) (PHE284) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Pyruvate oxidase |Aerococcus viridans [TaxId: 1377]
d3t4hb_ : (GLY179) (LYS214) [view usage] : b.82.2.10 |Double-stranded beta-helix |Clavaminate synthase-like |AlkB-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2aena_ : (THR190) (PRO208) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rotavirus a [TaxId: 10941]
d4bofa_ : (HIS291) (GLU314) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1n04a1 : (PRO218) (PRO235) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d4k57a_ : (GLU17) (LEU56) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Thermus thermophilus [TaxId: 262724]
d1ryaa_ : (GLN6) (LYS36) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d2i7fa_ : (PHE81) (PRO104) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Sphingobium yanoikuyae [TaxId: 13690]
d1dqva1 : (LEU372) (ASN403) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin III |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1vdha_ : (SER125) (GLN152) [view usage] : d.58.4.10 |Ferredoxin-like |Dimeric alpha+beta barrel |Chlorite dismutase-like |Polyketide synthase CurD homologue TTHA1714/TTC1352 |Thermus thermophilus [TaxId: 274]
d1zq7b_ : (ALA170) (PHE199) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Methanosarcina mazei [TaxId: 2209]
d1xmda1 : (THR120) (GLN158) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Peroxisomal carnitine O-octanoyltransferase, COT |Mouse (Mus musculus) [TaxId: 10090]
d2qgxb_ : (ASN77) (GLY94) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ijja2 : (ASP222) (GLY251) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1tv2a_ : (SER209) (LEU240) [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
d1wscb_ : (GLU183) (ILE215) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d1nldh2 : (PRO187) (LYS209) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d2gt4a_ : (GLN6) (THR38) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d1p6gs_ : (PHE40) (PHE60) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d1ae6h2 : (PRO184) (LYS209) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d2fdka_ : (GLY179) (PHE209) [view usage] : b.82.2.10 |Double-stranded beta-helix |Clavaminate synthase-like |AlkB-like |Alkylated DNA repair protein AlkB |Escherichia coli [TaxId: 562]
d1b0ea_ : (GLN192) (VAL209) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Elastase |Pig (Sus scrofa) [TaxId: 9823]
d1ifga_ : (GLN30) (LYS62) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d3h9na2 : (TYR102) (GLY121) [view usage] : b.41.1.0 |PRC-barrel domain |PRC-barrel domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d2feab_ : (GLU115) (PRO136) [view usage] : c.108.1.20 |HAD-like |HAD-like |MtnX-like |2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX |Bacillus subtilis [TaxId: 1423]
d4ai9a_ : (ILE168) (ALA186) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d2i8ta_ : (GLN6) (LYS36) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |automated matches |Escherichia coli [TaxId: 562]
d3tbfa_ : (ALA329) (ILE348) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Francisella tularensis [TaxId: 119856]
d4bofe_ : (HIS291) (GLU314) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1knwa2 : (ASN89) (GLN106) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Escherichia coli [TaxId: 562]
d1k5wa_ : (PRO348) (GLY379) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jp2a_ : (GLU6) (ASP27) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lxya_ : (SER285) (GLY312) [view usage] : d.126.1.4 |Pentein, beta/alpha-propeller |Pentein |Arginine deiminase |Arginine deiminase |Mycoplasma arginini [TaxId: 2094]
d1kwma1 : (ILE113) (ASP142) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase B |Human (Homo sapiens) [TaxId: 9606]
d3jwnh1 : (GLY66) (PRO83) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 488477]
d4tw1d_ : (ALA237) (ARG276) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 451516]
d4bofb_ : (HIS291) (GLU314) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1hage_ : (ASP125) (ARG165) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Thrombin |Human (Homo sapiens) [TaxId: 9606]
d2i8tb_ : (GLN6) (LYS36) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |automated matches |Escherichia coli [TaxId: 562]
d2ayqb_ : (THR256) (PRO277) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Bacillus coagulans [TaxId: 1398]
d4bofc_ : (HIS291) (GLU314) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1a4kh2 : (PRO185) (LYS210) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d3m8oh2 : (PRO192) (VAL218) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w5ma_ : (THR134) (ASP151) [view usage] : c.1.10.3 |TIM beta/alpha-barrel |Aldolase |5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1a4jb2 : (PRO191) (LYS216) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1xmca1 : (THR120) (GLN158) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Peroxisomal carnitine O-octanoyltransferase, COT |Mouse (Mus musculus) [TaxId: 10090]
d31bia_ : (GLY33) (LEU62) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d2qhfa_ : (ARG273) (SER291) [view usage] : d.258.1.0 |Chorismate synthase, AroC |Chorismate synthase, AroC |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1ayoa_ : (GLY19) (LYS49) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-2-macroglobulin |Cow (Bos taurus) [TaxId: 9913]
d1uhwa_ : (GLY7) (HIS36) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Mouse (Mus musculus) [TaxId: 10090]
d2fd8a1 : (GLY179) (PHE209) [view usage] : b.82.2.10 |Double-stranded beta-helix |Clavaminate synthase-like |AlkB-like |Alkylated DNA repair protein AlkB |Escherichia coli [TaxId: 562]
d2h3pa1 : (ASP131) (ASN171) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Carnitine acetyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d2b71a1 : (GLU24) (GLU53) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin-like protein PY00693 |Plasmodium yoelii [TaxId: 5861]
d1v3fa_ : (SER5) (LYS36) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin 2 |Mouse (Mus musculus) [TaxId: 10090]
d1jqga1 : (PRO113) (LEU143) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]
d2hw8a1 : (ILE149) (PRO174) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Thermus thermophilus [TaxId: 274]
d3tbfc_ : (ALA329) (ILE348) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Francisella tularensis [TaxId: 119856]
d3zo5a_ : (THR369) (THR404) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2woqa_ : (THR134) (ASP151) [view usage] : c.1.10.3 |TIM beta/alpha-barrel |Aldolase |5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1xl7a1 : (THR120) (GLN158) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Peroxisomal carnitine O-octanoyltransferase, COT |Mouse (Mus musculus) [TaxId: 10090]
d1vyia_ : (THR189) (ASN226) [view usage] : d.293.1.1 |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Phosphoprotein M1, C-terminal domain |Rabies virus, strain CVS-11 [TaxId: 11292]
d4lrya_ : (SER169) (GLY214) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1nm8a1 : (ASP110) (ASN150) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Carnitine acetyltransferase |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.94, d.58, i.1, c.108, b.29, c.82, b.47, c.56, c.80, c.77, c.55, d.3, b.2, c.31, b.1, d.126, d.20, c.43,
b.42, b.62, b.55, c.52, a.4, b.41, b.7, d.113, c.119, e.24, b.33, b.16, f.6, d.258, d.293, d.309