Tableau information
Concept source: d4mria_ amino acid (a.a.) range (GLU285)(LYS306)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU285) (LYS292) H1
(ALA294) (THR299) E2
(LEU301) (LYS306) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 99.3° E2
E3 113.1° 56.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ttna1 : (LEU53) (ASP75) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Dendritic cell-derived ubiquitin-like protein |Human (Homo sapiens) [TaxId: 9606]
d3gymi_ : (PRO2) (GLY37) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Pancreatic trypsin inhibitor, BPTI |Cow (Bos taurus) [TaxId: 9913]
d4f18a_ : (LYS1077) (LYS1100) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d1nova_ : (SER155) (PRO177) [view usage] : b.121.4.4 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Nodaviridae-like VP |Alphanodavirus capsid protein |Nodamura virus [TaxId: 12288]
d4m7ga_ : (SER146) (ASN186) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 1836]
d1x8ha_ : (ASP149) (GLY178) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Aeromonas hydrophila, CphA [TaxId: 644]
d4awua_ : (HIS109) (ASN128) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d2vu9a2 : (GLU1081) (ASP1108) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |automated matches |Clostridium botulinum [TaxId: 36826]
d2xg4b_ : (ASN83) (GLY109) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |PAP fimbrial minor pilin protein PapH |Escherichia coli [TaxId: 562]
d4g4ra1 : (LEU4) (TRP30) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
d1sbqa_ : (GLU95) (PHE118) [view usage] : c.124.1.6 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |Methenyltetrahydrofolate synthetase |5,10-methenyltetrahydrofolate synthetase homolog MPN348 |Mycoplasma pneumoniae [TaxId: 2104]
d3bnca1 : (GLN806) (ASN835) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |Lipoxigenase, C-terminal domain |Soybean (Glycine max), isozyme L1 [TaxId: 3847]
d1kbqb_ : (MET131) (GLY149) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |NAD(P)H:quinone reductase |Human (Homo sapiens) [TaxId: 9606]
d2gb4b_ : (PHE203) (GLU220) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d1ilda_ : (ILE18) (TYR42) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d1jeca1 : (HIS139) (ALA160) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4um9a2 : (ASP564) (HIS591) [view usage] : b.1.15.0 |Immunoglobulin-like beta-sandwich |Integrin domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ij0a1 : (ILE6) (LEU26) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1j70a1 : (HIS139) (ALA160) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3al4a_ : (GLU74) (THR88) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d3bgra1 : (THR296) (SER322) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1ut2h_ : (GLN120) (LYS139) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d2eeka_ : (HIS165) (ASN202) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d3pzwa2 : (GLN806) (ASN835) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |Lipoxigenase, C-terminal domain |Soybean (Glycine max), isozyme L1 [TaxId: 3847]
d1c7sa2 : (ARG48) (GLY77) [view usage] : b.2.2.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Bacterial chitobiase, n-terminal domain |Bacterial chitobiase, n-terminal domain |Serratia marcescens [TaxId: 615]
d1x8ia_ : (ASP149) (GLY178) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Aeromonas hydrophila, CphA [TaxId: 644]
d1usza_ : (GLN120) (LYS139) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d1dzja_ : (ASP25) (ASP46) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Odorant-binding protein |Pig (Sus scrofa) [TaxId: 9823]
d3o9wa1 : (MET88) (PRO108) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1y4ka1 : (GLN806) (ASN835) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |Lipoxigenase, C-terminal domain |Soybean (Glycine max), isozyme L1 [TaxId: 3847]
d1gzpa2 : (PHE84) (SER106) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1b [TaxId: 9606]
d2x5ia_ : (THR63) (LYS82) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human echovirus 7 [TaxId: 46018]
d2glua1 : (SER144) (TYR171) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d2gb4a_ : (PHE203) (GLU220) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d1jqdb_ : (PRO255) (ILE290) [view usage] : c.66.1.19 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Histamine methyltransferase |Histamine methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d4gftb_ : (SER109) (VAL124) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2gqaa_ : (HIS109) (ASN128) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d1ursb_ : (ASN122) (ASN148) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
d1im0a_ : (ILE18) (TYR42) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d2joya1 : (PRO38) (ASP58) [view usage] : b.34.5.7 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal protein L14e |Ribosomal protein L14e |Sulfolobus solfataricus [TaxId: 2287]
d2goua_ : (HIS109) (ASN128) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d4cqxc_ : (PRO118) (ASN145) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/turkey/turkey/1/2005(h5n1)) [TaxId: 375457]
d1xxla_ : (SER144) (TYR171) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d4awsa_ : (HIS109) (ASN128) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d3cmba1 : (THR109) (VAL134) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d2j2zb1 : (ASN83) (GLY109) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |PAP fimbrial minor pilin protein PapH |Escherichia coli [TaxId: 562]
d3hr9a_ : (GLY124) (TRP141) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Fibrobacter succinogenes [TaxId: 833]
d4r31a_ : (SER140) (ASP158) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1dmla1 : (GLU82) (LEU99) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL42 |Human herpesvirus type 1 [TaxId: 10298]
d1h65a_ : (ASN104) (ASP130) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Chloroplast protein translocon GTPase Toc34 |Pea (Pisum sativum) [TaxId: 3888]
d4aooa_ : (THR66) (ASP82) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1usqf_ : (GLN120) (LYS139) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d4r31d_ : (SER140) (ASP158) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1h65c_ : (ASN104) (ASP130) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Chloroplast protein translocon GTPase Toc34 |Pea (Pisum sativum) [TaxId: 3888]
d3kzga_ : (TYR189) (GLY206) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d4g4na1 : (LEU4) (TRP30) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, a.119, b.19, c.94, b.29, b.47, c.56, d.157, c.66, c.124, c.23, f.4, b.40, c.37, b.60, b.121, b.2, b.85, b.122,
b.1, d.347, b.42, d.19, d.131, b.34, b.113, d.15, g.8