Tableau information
Concept source: d2q39b_ amino acid (a.a.) range (ASP211)(SER227)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP211) (ALA216) H1
(GLY217) (LEU222) E2
(LEU222) (SER227) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 76.6° E2
E3 -124.3° -66.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1dypa_ : (ASP150) (THR170) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |kappa-Carrageenase, catalytic |Pseudoalteromonas carrageenovora [TaxId: 227]
d2k23a_ : (TRP23) (GLY38) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jv4a_ : (ASN11) (ASP27) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d4iuga4 : (ASP681) (ASN705) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Fungus (Aspergillus oryzae) [TaxId: 5062]
d1ndha2 : (HIS200) (GLU215) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |cytochrome b5 reductase |Pig (Sus scrofa), liver [TaxId: 9823]
d3oe2a_ : (ALA203) (GLN224) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 223283]
d1ezvb2 : (LEU338) (GLY357) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2lm3a_ : (THR291) (ALA316) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d1ydxa2 : (THR205) (ALA234) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MG438 |Mycoplasma genitalium [TaxId: 2097]
d1c76a_ : (ILE120) (LYS135) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d2egkd_ : (ARG166) (SER192) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2claa_ : (ARG18) (ILE41) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d4ppta_ : (ARG104) (SER120) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2d9fa_ : (ASP91) (ASP123) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3og2a4 : (ASP686) (ASN710) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d3emva_ : (PRO98) (GLU115) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Plasmodium vivax [TaxId: 5855]
d1an8a1 : (SER56) (ILE77) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal superantigen Spe-C |Streptococcus pyogenes [TaxId: 1314]
d2lt9a_ : (GLU642) (ILE664) [view usage] : b.1.27.1 |Immunoglobulin-like beta-sandwich |CalX-like |CalX-beta domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3i2bc_ : (PHE40) (HIS60) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b4ua_ : (GLY130) (SER150) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2xd2b_ : (THR127) (ASN154) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1mg1a1 : (PRO92) (ASN119) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1qabf_ : (ASP16) (GLU33) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d1z7nf1 : (GLY69) (LYS88) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Lactococcus lactis [TaxId: 1358]
d1f60b_ : (ASP1191) (LYS1205) [view usage] : d.58.12.1 |Ferredoxin-like |eEF-1beta-like |eEF-1beta-like |Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1c77a_ : (ILE120) (LYS135) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d3by0c_ : (GLN23) (GLY38) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d1fwqa_ : (SER47) (ASP73) [view usage] : b.88.1.1 |Mss4-like |Mss4-like |RabGEF Mss4 |RabGEF Mss4 |Human (Homo sapiens) [TaxId: 9606]
d1a0sp_ : (SER464) (PHE483) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d4meia_ : (SER198) (ASP217) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella tribocorum [TaxId: 382640]
d1lf6a1 : (TYR468) (PRO534) [view usage] : a.102.1.5 |alpha/alpha toroid |Six-hairpin glycosidases |Bacterial glucoamylase C-terminal domain-like |Bacterial glucoamylase, C-terminal domain |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1ta8a_ : (THR214) (ASP231) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1reqd1 : (ILE460) (GLU475) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d3ctpa_ : (PHE270) (ILE286) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Alkaliphilus metalliredigens [TaxId: 293826]
d1uxna_ : (THR143) (THR165) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
d1gxdc_ : (HIS120) (ASP150) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d3i0aa_ : (GLN23) (GLY38) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d4nljb_ : (ASP11) (SER27) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d1x89c_ : (GLN23) (GLY38) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d4orsa_ : (GLN35) (SER50) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u3ba1 : (LEU83) (PRO107) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) |Human (Homo sapiens) [TaxId: 9606]
d2fzpa1 : (GLY297) (ILE317) [view usage] : d.345.1.1 |NRDP1 C-terminal domain-like |NRDP1 C-terminal domain-like |USP8 interacting domain |E3 ubiquitin-protein ligase NRDP1 |Human (Homo sapiens) [TaxId: 9606]
d1l6ma_ : (GLN23) (GLY38) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d2ogba_ : (GLY297) (ILE317) [view usage] : d.345.1.1 |NRDP1 C-terminal domain-like |NRDP1 C-terminal domain-like |USP8 interacting domain |E3 ubiquitin-protein ligase NRDP1 |Human (Homo sapiens) [TaxId: 9606]
d1i05a_ : (ASN29) (ASP45) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d3pvjb_ : (SER26) (ASN51) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d2glvb_ : (PRO91) (ARG110) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Helicobacter pylori [TaxId: 210]
d2ntsa1 : (GLY5) (PRO30) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1yfra2 : (GLY185) (GLU204) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Alanyl-tRNA synthetase (AlaRS) |Aquifex aeolicus [TaxId: 63363]
d1oh2q_ : (SER464) (PHE483) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d1miqa_ : (GLU112) (SER132) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d4lsoa_ : (THR211) (PRO230) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella quintana [TaxId: 1134506]
d1dy0a_ : (HIS242) (GLN279) [view usage] : d.169.1.5 |C-type lectin-like |C-type lectin-like |Endostatin |Endostatin |Mouse (Mus musculus) [TaxId: 10090]
d3pedc_ : (GLN23) (GLY38) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d4p7fa_ : (LYS89) (CYS112) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.94, d.58, b.29, c.82, c.56, a.102, c.66, c.93, b.50, f.4, b.40, d.104, d.185, b.60, b.18, d.169, d.96, b.1,
c.43, d.17, d.38, c.25, d.142, d.287, d.15, b.88, d.26, b.36, d.345