Tableau information
Concept source: d1no5b_ amino acid (a.a.) range (LYS10)(SER53)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS10) (PRO26) H1
(THR29) (PHE33) E2
(LEU47) (SER53) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 141.0° E2
E3 -26.9° 144.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1j71a_ : (SER227) (PRO252) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida tropicalis) [TaxId: 5482]
d3lwba2 : (ASP292) (GLU330) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2fvha_ : (THR52) (GLN97) [view usage] : d.8.1.0 |Urease, gamma-subunit |Urease, gamma-subunit |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2woua_ : (GLU239) (ASP281) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Type I TGF-beta receptor R4 |Human (Homo sapiens) [TaxId: 9606]
d4bl2a1 : (GLY58) (THR103) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1st0a1 : (GLN247) (ALA282) [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |mRNA decapping enzyme DcpS C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1y8ca_ : (LYS205) (VAL243) [view usage] : c.66.1.43 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CAC2371-like |Putative methyltransferase CAC2371 |Clostridium acetobutylicum [TaxId: 1488]
d1a79a1 : (LEU85) (GLU116) [view usage] : c.52.2.1 |Restriction endonuclease-like |tRNA-intron endonuclease catalytic domain-like |tRNA-intron endonuclease catalytic domain-like |Tetrameric tRNA splicing endonuclease, C-terminal domain |Methanococcus jannaschii [TaxId: 2190]
d3bl7a1 : (GLN247) (ALA282) [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |mRNA decapping enzyme DcpS C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1be9a_ : (GLU395) (ASN415) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4a73a2 : (THR165) (TRP203) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1nv8a_ : (VAL252) (ARG279) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Thermotoga maritima [TaxId: 2336]
d1kywa2 : (GLN332) (LEU362) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2daqa1 : (PRO36) (TRP61) [view usage] : b.34.9.2 |SH3-like barrel |Tudor/PWWP/MBT |PWWP domain |Histone-lysine N-methyltransferase NSD3 |Human (Homo sapiens) [TaxId: 9606]
d1eiza_ : (GLY170) (GLY206) [view usage] : c.66.1.2 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |RNA methyltransferase FtsJ |RNA methyltransferase FtsJ |Escherichia coli [TaxId: 562]
d2e34a2 : (ILE34) (PHE67) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1j5ua_ : (GLU60) (PHE94) [view usage] : d.208.1.1 |MTH1598-like |MTH1598-like |MTH1598-like |Hypothetical protein TM1083 |Thermotoga maritima [TaxId: 2336]
d2rhsc_ : (SER174) (ASP221) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Staphylococcus haemolyticus [TaxId: 1283]
d3pcoc2 : (SER219) (VAL259) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1mmsa2 : (ILE35) (ILE70) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1byqa_ : (ASN40) (THR94) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |HSP90 |Human (Homo sapiens) [TaxId: 9606]
d1ugla_ : (THR17) (CYS47) [view usage] : g.3.7.5 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Plant defensins |S-locus pollen protein |Turnip (Brassica rapa) [TaxId: 3711]
d1lwla_ : (GLN360) (TRP406) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
d1nnea1 : (ASP405) (ARG454) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Thermus aquaticus [TaxId: 271]
d2gyag2 : (GLU36) (THR70) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Escherichia coli [TaxId: 562]
d1ug1a_ : (SER3) (GLY43) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Hypothetical protein Baa76854.1 (KIAA1010) |Human (Homo sapiens) [TaxId: 9606]
d1m0va_ : (SER4) (GLU36) [view usage] : d.195.1.1 |YopH tyrosine phosphatase N-terminal domain |YopH tyrosine phosphatase N-terminal domain |YopH tyrosine phosphatase N-terminal domain |YopH tyrosine phosphatase N-terminal domain |Yersinia pseudotuberculosis [TaxId: 633]
d1mpxa2 : (ASP358) (LYS402) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Xanthomonas citri [TaxId: 346]
d2w99b_ : (PRO113) (LEU156) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yrba1 : (PHE700) (ARG736) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Fantom |Human (Homo sapiens) [TaxId: 9606]
d1tp5a_ : (GLU395) (ASP415) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2vbna_ : (ARG52) (ILE81) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2j3wb1 : (VAL82) (ILE118) [view usage] : d.278.1.2 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |TRAPP components |TRAPPC5, similar to trafficking protein particle complex 5 |Zebrafish (Danio rerio) [TaxId: 7955]
d1dika3 : (PRO299) (GLN335) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d3alsa_ : (VAL110) (TYR138) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Cucumaria echinata [TaxId: 40245]
d1us5a_ : (ASP210) (GLN247) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative GluR0 ligand binding core |Thermus thermophilus [TaxId: 274]
d3qtyb1 : (GLN18) (LEU48) [view usage] : d.79.4.0 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d1u0bb1 : (ALA434) (ARG460) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Cysteinyl-tRNA synthetase (CysRS) |Escherichia coli [TaxId: 562]
d3l29a_ : (SER299) (ILE340) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Zaire ebolavirus - Mayinga (Zaire, 1976) [TaxId: 128952]
d2rhqa_ : (SER174) (ASP221) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Staphylococcus haemolyticus [TaxId: 1283]
d1k0ra1 : (SER123) (PRO147) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1 domain of NusA |Mycobacterium tuberculosis [TaxId: 1773]
d1us4a_ : (ASP210) (GLN247) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative GluR0 ligand binding core |Thermus thermophilus [TaxId: 274]
d1r7ma2 : (THR168) (ASP201) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-SceI |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2w6ka1 : (ALA100) (LEU135) [view usage] : c.151.1.1 |CobE/GbiG C-terminal domain-like |CobE/GbiG C-terminal domain-like |CobE/GbiG C-terminal domain-like |Cobalamin biosynthesis protein CobE |Pseudomonas aeruginosa [TaxId: 287]
d3g33a_ : (GLU120) (ALA162) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.94, a.104, c.66, b.50, d.122, d.144, b.40, d.104, d.169, d.278, d.17, d.79, d.142, c.52, b.34, d.162, b.7, d.95, d.13,
d.218, a.27, b.36, d.388, d.8, a.113, c.151, g.3, d.47, d.195, d.208