Tableau information
Concept source: d2hdxa_ amino acid (a.a.) range (ILE597)(SER627)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE597) (ARG605) H1
(SER617) (LEU621) E2
(VAL622) (SER627) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -136.2° E2
E3 137.0° -49.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2hsab_ : (GLN119) (GLY156) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Solanum lycopersicum [TaxId: 4081]
d1t0ub_ : (PHE134) (ASP160) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Escherichia coli [TaxId: 562]
d2k23a_ : (LEU94) (TYR115) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1i7qb_ : (CYS85) (GLY108) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Anthranilate synthase GAT subunit, TrpG |Serratia marcescens [TaxId: 615]
d4g8jb_ : (ASP132) (ASP159) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Vibrio cholerae [TaxId: 243277]
d4i13b_ : (PRO110) (SER126) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1ae6h1 : (LYS96) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d4pmxa_ : (PRO24) (ASN56) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d4lxha_ : (PHE44) (ASP72) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Sphingomonas wittichii [TaxId: 392499]
d2a8ea1 : (ASP150) (GLN176) [view usage] : d.296.1.1 |YktB/PF0168-like |YktB/PF0168-like |YktB-like |Hypothetical protein YktB |Bacillus subtilis [TaxId: 1423]
d4a16a_ : (VAL408) (THR436) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ebaa_ : (ASP104) (SER121) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d2y7kd_ : (ASN134) (TYR171) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d4dzta_ : (TYR165) (SER203) [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d4grwh_ : (ARG106) (SER123) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama glama [TaxId: 9844]
d2iy2a_ : (ALA5) (GLY25) [view usage] : d.17.3.1 |Cystatin-like |DsbC/DsbG N-terminal domain-like |DsbC/DsbG N-terminal domain-like |automated matches |Escherichia coli [TaxId: 562]
d2k9xa_ : (ASP76) (GLY102) [view usage] : d.15.3.0 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1vl7a_ : (GLN116) (ILE141) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Alr5027 |Nostoc sp. PCC 7120 [TaxId: 103690]
d1gpma2 : (CYS86) (GLY109) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GMP synthetase |Escherichia coli [TaxId: 562]
d4i2va_ : (SER135) (ASP160) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Yersinia pseudotuberculosis [TaxId: 633]
d3b9jc2 : (ARG980) (ILE1007) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Xanthine oxidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1ks4a_ : (LEU21) (SER40) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Aspergillus niger [TaxId: 5061]
d1nmoa_ : (GLY222) (ALA247) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d1mrla_ : (LEU24) (ASN42) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d2ew0a1 : (ILE108) (GLY131) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein ACIAD0353 |Acinetobacter sp. ADP1 [TaxId: 62977]
d1o0xa_ : (GLU158) (VAL176) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Thermotoga maritima [TaxId: 2336]
d1i3ua_ : (ASP112) (VAL127) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Llama (Lama glama) [TaxId: 9844]
d1kr0a_ : (GLY167) (SER192) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1w0ha_ : (GLY295) (MSE322) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease ERI1 |Human (Homo sapiens) [TaxId: 9606]
d3mx6a_ : (SER152) (ILE170) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d1ef0a3 : (HIS343) (GLY374) [view usage] : d.95.2.2 |Homing endonuclease-like |Homing endonucleases |Intein endonuclease |VMA1-derived endonuclease (VDE) PI-SceI |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3zv7a_ : (ILE401) (ASN429) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |automated matches |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d2j3qa_ : (ILE401) (ASN429) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d4a5oa2 : (ALA197) (VAL230) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2cb0b_ : (SER114) (SER132) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d3lqwa_ : (ARG64) (ASP81) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d4nbzb_ : (ASP107) (SER124) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Llama (Lama glama) [TaxId: 9844]
d1j3lc_ : (ARG4) (GLY26) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Demethylmenaquinone methyltransferase |Thermus thermophilus [TaxId: 274]
d3ax7b4 : (ARG980) (ILE1007) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Xanthine oxidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1u0qa_ : (SER100) (SER113) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2ppva_ : (GLU276) (SER295) [view usage] : c.143.1.0 |CofD-like |CofD-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d3keia_ : (LEU90) (GLY106) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1j3lf_ : (ARG4) (GLY26) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Demethylmenaquinone methyltransferase |Thermus thermophilus [TaxId: 274]
d2hqja_ : (LEU146) (ALA176) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Leishmania major [TaxId: 5664]
d1r64a2 : (ASP325) (TYR360) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Kexin, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3mx6b_ : (SER152) (ILE170) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d2hdxa_ : (ILE597) (SER627) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4nc0b_ : (ASP107) (SER124) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2cb0a_ : (SER114) (SER132) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1o6xa_ : (VAL59) (GLN81) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d1scja_ : (TYR167) (PRO201) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus subtilis, E [TaxId: 1423]
d4lf1a1 : (LYS13) (GLY35) [view usage] : d.58.9.0 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d3dbia_ : (VAL297) (ARG330) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2p42b_ : (ARG104) (SER121) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1u65a_ : (ILE401) (ASN429) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d3v92b2 : (PHE286) (ASN315) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b6na_ : (TYR169) (SER207) [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Serratia sp. [TaxId: 348903]
d4hemf_ : (ARG106) (SER122) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d4poya_ : (ARG104) (SER121) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d4ag7a_ : (LEU146) (GLN163) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4oclc_ : (LEU106) (SER122) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.119, c.69, b.81, c.94, c.2, d.58, b.29, c.56, c.80, c.93, c.135, c.23, c.55, b.60, d.127, b.85, b.1, b.45, d.108,
d.133, c.8, d.17, c.41, b.62, d.15, d.95, d.93, c.143, d.310, d.296