Tableau information
Concept source: d4l04b_ amino acid (a.a.) range (GLY136)(PRO158)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY136) (ALA141) H1
(ALA141) (VAL145) E2
(GLY150) (PRO158) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -41.3° E2
E3 123.8° 153.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o6za2 : (GLU247) (ASP306) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
d1xk7a_ : (ASN331) (GLY353) [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
d2f43a1 : (ASP411) (ILE438) [view usage] : a.69.1.0 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4i42b_ : (ASP5) (SER30) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3g7nb_ : (ILE68) (SER85) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Penicillium expansum [TaxId: 27334]
d3fi9a2 : (PHE235) (ASP288) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 431947]
d41bia_ : (GLY33) (LEU62) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d1cd3f_ : (ASN2) (ILE36) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d2ahna_ : (TYR199) (CYS221) [view usage] : b.25.1.0 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |automated matches |Prunus avium [TaxId: 42229]
d1hkva2 : (GLU245) (PRO270) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Mycobacterium tuberculosis [TaxId: 1773]
d3t88a_ : (ASP5) (SER30) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3u95a2 : (ILE347) (PRO398) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |automated matches |Thermotoga neapolitana [TaxId: 309803]
d1zq7b_ : (THR3) (HIS63) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |automated matches |Methanosarcina mazei [TaxId: 2209]
d1xfda1 : (GLU294) (SER321) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3vqla_ : (ARG17) (ASP41) [view usage] : b.15.1.0 |HSP20-like chaperones |HSP20-like chaperones |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d3cync_ : (GLY34) (GLU63) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1af0a1 : (ALA385) (PHE406) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d1l1qa_ : (SER4) (SER29) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Giardia intestinalis [TaxId: 5741]
d1srpa1 : (ALA385) (PHE406) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d3tgla_ : (ILE85) (HIS108) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizomucor miehei [TaxId: 4839]
d1piv1_ : (THR76) (ARG109) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d4c0sa3 : (TYR418) (ALA434) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2gria1 : (ASP79) (PHE107) [view usage] : d.15.14.1 |beta-Grasp (ubiquitin-like) |NSP3A-like |NSP3A-like |Nsp3 |SARS coronavirus [TaxId: 227859]
d3pt6a5 : (ALA1338) (SER1355) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d2zqzb2 : (PHE248) (PRO305) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Lactobacillus casei [TaxId: 1582]
d2f2fb1 : (ARG249) (HIS281) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Actinobacillus actinomycetemcomitans [TaxId: 714]
d1a7lb_ : (PRO154) (LYS179) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d3tcya_ : (LEU265) (PRO278) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Phenylalanine hydroxylase, PAH |Chromobacterium violaceum [TaxId: 536]
d3ju8a_ : (VAL107) (GLY138) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1vjta2 : (GLN345) (PRO398) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |Putative alpha-glucosidase TM0752 |Thermotoga maritima [TaxId: 2336]
d4ctha_ : (THR182) (LEU225) [view usage] : d.92.1.4 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neutral endopeptidase (neprilysin) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4k6lf_ : (ALA241) (PHE264) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Salmonella enterica [TaxId: 90370]
d1sata1 : (ALA385) (PHE406) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d3srga_ : (ARG19) (LEU44) [view usage] : b.68.6.2 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |Serum paraoxonase/arylesterase 1, PON1 |Serum paraoxonase/arylesterase 1, PON1 |Artificial gene [TaxId: 32630]
d1eg9a1 : (GLU24) (LYS58) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |Naphthalene 1,2-dioxygenase alpha subunit, N-domain |Pseudomonas putida [TaxId: 303]
d3pvja_ : (GLU213) (ASP247) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d3pt6b5 : (ALA1338) (SER1355) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d3u95b2 : (HIS346) (PRO398) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |automated matches |Thermotoga neapolitana [TaxId: 309803]
d4i42c_ : (ASP5) (THR31) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4a19x_ : (ASP11) (VAL43) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1u3em2 : (SER109) (GLU134) [view usage] : d.285.1.1 |DNA-binding domain of intron-encoded endonucleases |DNA-binding domain of intron-encoded endonucleases |DNA-binding domain of intron-encoded endonucleases |Intron-encoded homing endonuclease I-HmuI |Bacteriophage SPO1 [TaxId: 10685]
d1af6a_ : (ILE160) (ALA196) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Maltoporin (also LamB protein) |Escherichia coli [TaxId: 562]
d1bmv21 : (LEU3138) (ILE3172) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d1y4zb1 : (GLY96) (SER128) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d1brwa3 : (VAL404) (PRO426) [view usage] : d.41.3.1 |alpha/beta-Hammerhead |Pyrimidine nucleoside phosphorylase C-terminal domain |Pyrimidine nucleoside phosphorylase C-terminal domain |Pyrimidine nucleoside phosphorylase |Bacillus stearothermophilus [TaxId: 1422]
d4pj0b_ : (LEU135) (VAL178) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II core light harvesting protein PsbB |Thermosynechococcus elongatus [TaxId: 146786]
d3dwga_ : (SER6) (LEU41) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1grqa_ : (PRO44) (PRO66) [view usage] : c.37.1.3 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Chloramphenicol phosphotransferase |Chloramphenicol phosphotransferase |Streptomyces venezuelae [TaxId: 54571]
d3vbea_ : (HIS57) (GLN85) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
d4c03a_ : (ASN352) (PHE374) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qwta_ : (ASN190) (THR219) [view usage] : b.26.1.3 |SMAD/FHA domain |SMAD/FHA domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Human (Homo sapiens) [TaxId: 9606]
d2mev1_ : (LYS32) (LEU71) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Mengo encephalomyocarditis virus coat proteins |Mengovirus [TaxId: 12107]
d1dmta_ : (THR182) (LEU225) [view usage] : d.92.1.4 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neutral endopeptidase (neprilysin) |Neutral endopeptidase (neprilysin) |Human (Homo sapiens) [TaxId: 9606]
d1irax_ : (GLY37) (ILE60) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d3pvjb_ : (SER212) (ASP247) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d3pt9a3 : (ALA1338) (SER1355) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d1o58a_ : (HIS0) (LEU25) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thermotoga maritima [TaxId: 2336]
d1ilta_ : (LYS93) (SER113) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d1dsna_ : (ASP220) (PRO238) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3ju8b_ : (VAL107) (GLY138) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4i42a_ : (ASP5) (SER30) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2kl2a_ : (PRO122) (SER135) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein LOC223267 |Mouse (Mus musculus) [TaxId: 10090]
d4bcta_ : (ASP206) (PHE223) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Actinidia deliciosa [TaxId: 3627]
d1nf2a_ : (MET44) (LYS82) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein TM0651 |Thermotoga maritima [TaxId: 2336]
d2dsmb_ : (HIS12) (PRO31) [view usage] : d.372.1.1 |YqaI-like |YqaI-like |YqaI-like |Hypothetical protein YqaI |Bacillus subtilis [TaxId: 1423]
d2jzaa1 : (SER52) (SER107) [view usage] : b.33.1.3 |ISP domain |ISP domain |NirD-like |NADH-nitrite reductase small subunit NirD |Erwinia carotovora [TaxId: 554]
d3wu2b_ : (PRO136) (VAL178) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
d1z01a1 : (ASP128) (GLU154) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO |Pseudomonas putida [TaxId: 303]
d3cjib_ : (LEU44) (TYR72) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Seneca valley virus [TaxId: 390157]
d3zkjf_ : (ARG68) (LEU88) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2egga2 : (HIS217) (GLY262) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Geobacillus kaustophilus [TaxId: 1462]
d2q2ta1 : (ASN262) (GLY291) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |ATP-dependent DNA ligase |Chlorella virus PBCV-1 [TaxId: 10506]
d1eb6a_ : (GLN49) (LEU94) [view usage] : d.92.1.12 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Fungal zinc peptidase |Fungal zinc peptidase |Aspergillus oryzae, deuterolysin [TaxId: 5062]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.70, c.1, c.123, b.82, c.69, c.94, c.2, d.58, i.1, c.108, c.79, c.82, c.66, d.92, c.77, c.14, f.4, b.40,
c.37, d.178, c.47, d.151, b.121, b.42, c.61, d.41, b.26, b.25, d.162, d.15, b.15, b.33, b.44, a.69, f.55, d.309, d.269, d.285,
d.372