Tableau information
Concept source: d1kxba_ amino acid (a.a.) range (HIS148)(GLN168)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS148) (LEU154) H1
(LYS155) (ALA161) E2
(ASP163) (GLN168) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -65.1° E2
E3 108.5° 150.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgea4 : (ALA149) (GLY172) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4leja1 : (SER71) (LEU88) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Pinus koraiensis [TaxId: 88728]
d1y0bd_ : (ASN-1) (VAL22) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine phosphoribosyltransferase |Bacillus subtilis [TaxId: 1423]
d4bofa_ : (HIS275) (HIS291) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d2we2a2 : (HIS218) (ALA244) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Human herpesvirus 4 [TaxId: 10377]
d3b1ua3 : (HIS471) (ALA492) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1vs6h1 : (THR96) (ALA148) [view usage] : d.99.1.1 |Ribosomal protein L9 C-domain |Ribosomal protein L9 C-domain |Ribosomal protein L9 C-domain |Ribosomal protein L9 C-domain |Escherichia coli [TaxId: 562]
d2gbwa2 : (PRO234) (ILE253) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Sphingobium yanoikuyae [TaxId: 13690]
d4jkwa_ : (SER63) (ILE86) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3o5fa_ : (THR15) (VAL37) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hyga2 : (PHE230) (GLU287) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |MJ0490, lactate/malate dehydrogenase |Methanococcus jannaschii [TaxId: 2190]
d3ljda_ : (ASN56) (GLN79) [view usage] : d.5.1.0 |RNase A-like |RNase A-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d2dy0b_ : (THR4) (VAL31) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3vooa_ : (GLY363) (GLY415) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
d2vx4a_ : (GLY180) (PRO212) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
d1bd3a_ : (LYS59) (LYS104) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d1a73a_ : (THR4) (TYR42) [view usage] : d.4.1.3 |His-Me finger endonucleases |His-Me finger endonucleases |Intron-encoded homing endonucleases |Intron-encoded homing endonuclease I-PpoI |Slime mold (Physarum polycephalum) [TaxId: 5791]
d4agka_ : (HIS151) (LYS171) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Aura virus [TaxId: 44158]
d1qb3c_ : (THR414) (LEU446) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |cks1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1lrwa_ : (ASN274) (THR297) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Paracoccus denitrificans [TaxId: 266]
d4agja_ : (HIS151) (LYS171) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Aura virus [TaxId: 44158]
d2vf0a_ : (LYS2) (SER28) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d2wnsa_ : (LEU8) (LEU40) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fn9a_ : (GLY8) (GLY46) [view usage] : d.196.1.1 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Reovirus [TaxId: 10891]
d1j7xa_ : (GLU89) (ASP115) [view usage] : c.14.1.2 |ClpP/crotonase |ClpP/crotonase |Tail specific protease, catalytic domain |Interphotoreceptor retinoid-binding protein IRBP |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1llda2 : (TYR238) (THR290) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Bifidobacterium longum, strain am101-2 [TaxId: 216816]
d1afra_ : (GLN342) (LYS362) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |delta 9-stearoyl-acyl carrier protein desaturase |Castor bean (Ricinus communis) [TaxId: 3988]
d3lf6a_ : (VAL46) (THR76) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |automated matches |Artificial gene [TaxId: 32630]
d2zada2 : (ASP319) (VAL342) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1kaca_ : (ASN520) (ASN549) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d1qb3b_ : (THR214) (LEU246) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |cks1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4bofe_ : (HIS275) (HIS291) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1ltkc_ : (ASN120) (ALA141) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1avac_ : (ASN52) (PHE84) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |Amylase/subtilisin inhibitor |Barley (Hordeum vulgare), seed [TaxId: 4513]
d2we3a2 : (HIS218) (TRP243) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Human herpesvirus 4 [TaxId: 10377]
d1defa_ : (GLU26) (PRO75) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Escherichia coli [TaxId: 562]
d2br3f_ : (PHE15) (LYS65) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d1jlra_ : (LYS59) (LYS104) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d3n6la_ : (ILE266) (GLY285) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Human enterovirus 71 [TaxId: 39054]
d1wyka_ : (HIS148) (GLN168) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Sindbis virus [TaxId: 11034]
d4bofb_ : (HIS275) (HIS291) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d2feza1 : (ASP89) (SER104) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |Probable regulatory protein EmbR |Mycobacterium tuberculosis [TaxId: 1773]
d4bofc_ : (HIS275) (HIS291) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d3j38d_ : (ASP164) (MET191) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3u5cd_ : (GLN162) (MET189) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1kqfa2 : (TYR779) (ASN808) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase N, alpha subunit |Escherichia coli [TaxId: 562]
d1nl2a1 : (GLY71) (VAL141) [view usage] : g.14.1.1 |Kringle-like |Kringle-like |Kringle modules |Prothrombin |Cow (Bos taurus) [TaxId: 9913]
d3heia_ : (ASP6) (MET46) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q31a_ : (PHE195) (SER228) [view usage] : b.74.1.0 |Carbonic anhydrase |Carbonic anhydrase |automated matches |automated matches |Fungus (Aspergillus oryzae) [TaxId: 5062]
d1itca2 : (PRO104) (GLU128) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial beta-amylase |Bacillus cereus [TaxId: 1396]
d3qy2b_ : (THR14) (LEU46) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1s1hc_ : (LEU156) (MET188) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1br9a_ : (GLY159) (TRP177) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d2br5c_ : (PHE15) (LYS65) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d3qy2a_ : (THR14) (PRO47) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mufa2 : (ASP209) (VAL234) [view usage] : b.85.7.1 |beta-clip |SET domain |Histone lysine methyltransferases |Histone H3 K4-specific methyltransferase SET7/9 catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1znca_ : (LYS187) (PHE212) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), isozyme IV [TaxId: 9606]
d1vzba_ : (GLN4) (SER30) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d1evwa_ : (THR4) (TYR42) [view usage] : d.4.1.3 |His-Me finger endonucleases |His-Me finger endonucleases |Intron-encoded homing endonucleases |Intron-encoded homing endonuclease I-PpoI |Slime mold (Physarum polycephalum) [TaxId: 5791]
d2gbwc2 : (PRO234) (ILE253) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Sphingobium yanoikuyae [TaxId: 13690]
d3fdra_ : (GLN6) (ARG46) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |Tudor and KH domain-containing protein TDRKH |Human (Homo sapiens) [TaxId: 9606]
d1xcja_ : (CYS15) (LEU36) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1xizb_ : (VAL38) (HIS67) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Putative PTS protein STM3784 |Salmonella typhimurium [TaxId: 90371]
d4foxh_ : (ILE93) (ASP110) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1qb3a_ : (THR14) (LEU46) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |cks1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ecwa_ : (THR97) (MET118) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |SIV matrix antigen |Simian immunodeficiency virus [TaxId: 11723]
d4tqoa_ : (ASN302) (THR325) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |automated matches |Methylococcus capsulatus [TaxId: 243233]
d2mnya_ : (GLY318) (HIS335) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d6ta_ : (LYS11) (CYS35) [view usage] : d.14.1.2 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |RNase P protein |RNase P protein |Staphylococcus aureus [TaxId: 1280]
d1y0ba1 : (MSE1) (SER24) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine phosphoribosyltransferase |Bacillus subtilis [TaxId: 1423]
d1jlsc_ : (LYS59) (ILE110) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d2spta1 : (GLY71) (VAL141) [view usage] : g.14.1.1 |Kringle-like |Kringle-like |Kringle modules |Prothrombin |Cow (Bos taurus) [TaxId: 9913]
d2nrac2 : (SER194) (TYR217) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |Replication initiation protein PI |Escherichia coli [TaxId: 562]
d4k55a_ : (SER63) (ILE86) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mw9a1 : (TYR481) (ASP501) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1h0ha2 : (ALA100) (GLY122) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Tungsten containing formate dehydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1bm5a_ : (MET27) (THR57) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d1p69a_ : (ASN520) (ASN549) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d2wnsb_ : (LEU8) (LEU40) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2psda_ : (GLY17) (LYS41) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.8, c.1, b.82, c.69, c.81, a.104, i.1, c.26, b.74, b.47, d.117, c.66, c.14, d.129, b.40, d.185, c.86, b.60, b.18,
d.14, b.85, b.1, d.126, b.42, a.25, b.21, c.61, d.167, b.34, a.4, d.5, d.162, d.26, d.4, d.112, a.61, d.97, g.14, g.50,
d.196, d.99