Tableau information
Concept source: d4dj6e_ amino acid (a.a.) range (SER178)(GLY209)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER178) (TYR186) H1
(ASN190) (GLY196) E2
(ASN199) (GLY209) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 63.8° E2
E3 -123.0° 156.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3maeb_ : (PHE245) (ASN276) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Listeria monocytogenes [TaxId: 265669]
d1h6ha_ : (ALA4) (LYS48) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |p40phox NADPH oxidase |Human (Homo sapiens) [TaxId: 9606]
d2ahme1 : (TYR140) (GLN162) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d2q85a1 : (CYS113) (LEU129) [view usage] : d.145.1.2 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Escherichia coli [TaxId: 562]
d4llaa1 : (SER69) (ILE99) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xm5c_ : (ALA3049) (CYS3089) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |Hypothetical protein YbeY |Escherichia coli [TaxId: 562]
d2iwfa2 : (TRP476) (ALA512) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d1mjtb_ : (LYS137) (TYR174) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Staphylococcus aureus [TaxId: 1280]
d1q2ra_ : (GLY104) (SER136) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 542]
d2g8ea_ : (ASP256) (TRP298) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d1k3ca1 : (THR375) (SER406) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d1g5ua_ : (GLY1058) (GLN1076) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Rubber tree (Hevea brasiliensis), hevb8 [TaxId: 3981]
d1h54b1 : (ILE672) (ARG716) [view usage] : a.102.1.4 |alpha/alpha toroid |Six-hairpin glycosidases |Glycosyltransferase family 36 C-terminal domain |Lactobacillus maltose phosphorylase, central domain |Lactobacillus brevis [TaxId: 1580]
d1qx6a_ : (ASN188) (SER244) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase B |Staphylococcus aureus [TaxId: 1280]
d2an0a_ : (ARG145) (GLU182) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Bacillus subtilis [TaxId: 1423]
d1oz9a_ : (GLN51) (SER90) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |Hypothetical protein Aq_1354 |Aquifex aeolicus [TaxId: 63363]
d4hfwa1 : (GLN79) (ILE105) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b5dx2 : (SER208) (ASP238) [view usage] : c.6.2.4 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |AmyC N-terminal domain-like |Alpha-amylase AmyC |Thermotoga maritima [TaxId: 2336]
d4tyua_ : (LYS90) (VAL127) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1fvca_ : (GLN79) (ILE106) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Engineered (including hybrid species)
d3u74u3 : (GLY217) (GLY240) [view usage] : g.7.1.0 |Snake toxin-like |Snake toxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ywhm3 : (GLY217) (GLY240) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d1xxea2 : (SER199) (ASN213) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1smpi_ : (SER7) (THR30) [view usage] : b.61.2.1 |Streptavidin-like |beta-Barrel protease inhibitors |Metalloprotease inhibitor |Metalloprotease inhibitor |Erwinia chrysanthemi [TaxId: 556]
d1gqea_ : (LEU192) (PRO224) [view usage] : e.38.1.1 |Release factor |Release factor |Release factor |Polypeptide chain release factor 2 (RF2) |Escherichia coli [TaxId: 562]
d1itva_ : (ILE44) (GLY72) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
d1ywhg3 : (GLY217) (GLY240) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d1xm5a_ : (ALA1049) (CYS1089) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |Hypothetical protein YbeY |Escherichia coli [TaxId: 562]
d1z6na1 : (LEU100) (GLU129) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Hypothetical protein PA1234 |Pseudomonas aeruginosa [TaxId: 287]
d1ehkb1 : (ASP66) (PHE86) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Thermus thermophilus, ba3 type [TaxId: 274]
d1e7pa1 : (ASP556) (ASP584) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d1jnra1 : (ASN609) (GLN637) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Adenylylsulfate reductase A subunit |Archaeoglobus fulgidus [TaxId: 2234]
d2cr9a1 : (SER96) (GLU132) [view usage] : d.297.1.1 |WGR domain-like |WGR domain-like |WGR domain |Poly [ADP-ribose] polymerase-1, PARP-1 |Human (Homo sapiens) [TaxId: 9606]
d3i99a1 : (CYS127) (PHE143) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2iera2 : (SER211) (ASN225) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1dksa_ : (SER39) (ARG71) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d2w9lb_ : (GLN111) (VAL136) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Coxsackie virus and adenovirus receptor (Car), domain 1 |Human (Homo sapiens) [TaxId: 9606]
d2e5ha_ : (LYS61) (ILE85) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hsta_ : (SER186) (VAL221) [view usage] : c.55.4.2 |Ribonuclease H-like motif |Translational machinery components |ERF1/Dom34 middle domain-like |Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 |Human (Homo sapiens) [TaxId: 9606]
d1hb5b_ : (PRO321) (LYS365) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d2lkca_ : (GLY20) (PHE59) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d2assc_ : (SER3039) (PRO3072) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d1ff5a2 : (ASP180) (THR210) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d2jqgr_ : (ILE107) (VAL127) [view usage] : d.3.1.2 |Cysteine proteinases |Cysteine proteinases |FMDV leader protease |automated matches |Foot-and-mouth disease virus (strain o1) [TaxId: 73482]
d1g1ga_ : (CYS32) (ASN68) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Human (Homo sapiens), 1B [TaxId: 9606]
d1h5va_ : (SER4) (GLU22) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Bacillus agaradhaerens [TaxId: 76935]
d2dmga_ : (LEU85) (ALA117) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cm2a_ : (CYS32) (ASN68) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fbzx_ : (ARG145) (GLU182) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Bacillus subtilis [TaxId: 1423]
d2bs3a1 : (ASP556) (ALA582) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d1bccd2 : (THR57) (PRO84) [view usage] : a.3.1.3 |Cytochrome c |Cytochrome c |Cytochrome bc1 domain |Cytochrome bc1 domain |Chicken (Gallus gallus) [TaxId: 9031]
d1t97b_ : (ASN2) (GLY28) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d3kcma_ : (ARG121) (GLY149) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2m68a_ : (ALA1618) (TRP1640) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2huma_ : (ASN2) (GLY28) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d1p42a2 : (SER211) (ASN225) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d3logd_ : (ARG382) (LEU402) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1j86b2 : (THR142) (ILE170) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |IgE high affinity receptor alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3qkpa_ : (CYS32) (ASN68) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Human (Homo sapiens), 1B [TaxId: 9606]
d1gkab_ : (ASP22) (TYR53) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Alpha-crustacyanin |European lobster (Homarus gammarus) [TaxId: 6707]
d1fwxb1 : (TRP461) (ALA495) [view usage] : b.6.1.4 |Cupredoxin-like |Cupredoxins |Nitrosocyanin |Nitrous oxide reductase, C-terminal domain |Paracoccus denitrificans [TaxId: 266]
d1fvcc_ : (GLN79) (ILE106) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Engineered (including hybrid species)
d1t34a_ : (ASN347) (ASP367) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Hormone binding domain of the atrial natriuretic peptide receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3qy2a_ : (THR70) (PRO103) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1q1ma_ : (CYS32) (ASN68) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Human (Homo sapiens), 1B [TaxId: 9606]
d1xaua_ : (HIS86) (VAL113) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |B and T lymphocyte attenuator, Btla |Mouse (Mus musculus) [TaxId: 10090]
d3bikc_ : (ARG114) (VAL144) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d2o72a2 : (ASP180) (VAL211) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Human (Homo sapiens) [TaxId: 9606]
d1pvqa2 : (VAL217) (ALA252) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d4aoga_ : (ASN45) (THR76) [view usage] : b.138.1.0 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |automated matches |automated matches |Neurospora crassa [TaxId: 367110]
d1f2qa2 : (THR142) (LYS171) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |IgE high affinity receptor alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d1jewr_ : (GLN113) (VAL141) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Coxsackievirus b3 (m strain) with its cellular receptor car |Human (Homo sapiens) [TaxId: 9606]
d2an2a_ : (CYS145) (GLU182) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Bacillus subtilis [TaxId: 1423]
d3fdwa_ : (GLU434) (GLN464) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jllb2 : (SER65) (ASN94) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d2g5fa1 : (ARG382) (LEU402) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1edha2 : (ASP180) (VAL211) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d1rh8a_ : (SER4723) (ASP4754) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Piccolo |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1qlba1 : (ASP556) (ALA582) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d1khca_ : (SER252) (GLU278) [view usage] : b.34.9.2 |SH3-like barrel |Tudor/PWWP/MBT |PWWP domain |DNA methyltransferase DNMT3B |Mouse (Mus musculus) [TaxId: 10090]
d4pv4a1 : (SER45) (LEU81) [view usage] : c.55.2.0 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d3bt1u2 : (GLY217) (GLY240) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.19, c.6, d.58, a.102, d.92, c.93, c.45, i.6, c.37, c.47, c.55, d.2, b.60, d.14, d.3, d.174, b.6, b.1, d.110,
c.43, d.142, b.34, d.145, c.91, b.61, a.3, b.7, e.38, b.66, g.7, a.7, b.100, d.161, b.138, b.64, d.97, d.189, d.163, d.302,
d.297