Tableau information
Concept source: d1p8kz2 amino acid (a.a.) range (TYR136)(ARG172)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR136) (GLU148) H1
(GLU148) (ASN157) E2
(TYR162) (ARG172) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 54.9° E2
E3 108.2° 146.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1z90b1 : (VAL403) (GLY426) [view usage] : b.81.1.4 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |GlmU C-terminal domain-like |UDP-glucose pyrophosphorylase 2 (UDPGP 2) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1dtdb_ : (ALA40) (PRO64) [view usage] : g.30.1.1 |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d2abzc1 : (ALA40) (PRO64) [view usage] : g.30.1.1 |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d1civa2 : (ALA277) (ASP337) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Flaveria bidentis, chloroplast [TaxId: 4224]
d4tpwb_ : (ASP143) (THR168) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Human (Homo sapiens) [TaxId: 9606]
d7mdhc2 : (ALA281) (LEU338) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
d2puha_ : (THR5) (GLY31) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d2isga_ : (ILE130) (GLU148) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d2og1b_ : (THR5) (GLY31) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d4d3ed_ : (HIS131) (GLN191) [view usage] : a.250.1.0 |IpaD-like |IpaD-like |automated matches |automated matches |Shigella flexneri [TaxId: 1086030]
d3eh8a1 : (THR5) (LEU32) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Emericella nidulans [TaxId: 162425]
d1wdaa3 : (TRP347) (SER370) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2nvpa1 : (ASN334) (PRO349) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d4hu1b_ : (ASP54) (ASP73) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pkqb1 : (LYS64) (SER82) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d1t9ja_ : (LYS7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1dzca_ : (SER52) (SER72) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d3h9na2 : (TYR156) (ASP173) [view usage] : b.41.1.0 |PRC-barrel domain |PRC-barrel domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d2ab5b1 : (ILE264) (LEU291) [view usage] : d.95.2.0 |Homing endonuclease-like |Homing endonucleases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m5xa_ : (PRO9) (ARG51) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-MsoI |Monomastix sp. cl-1997 [TaxId: 141716]
d2doia2 : (TRP190) (ILE240) [view usage] : g.14.1.1 |Kringle-like |Kringle-like |Kringle modules |Plasminogen |Human (Homo sapiens) [TaxId: 9606]
d1hzua2 : (ASP444) (PRO467) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
d3zc8a_ : (PRO50) (PHE79) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Murraya koenigii [TaxId: 311449]
d3bpba_ : (SER200) (PRO215) [view usage] : d.126.1.3 |Pentein, beta/alpha-propeller |Pentein |Dimethylarginine dimethylaminohydrolase DDAH |Dimethylarginine dimethylaminohydrolase DDAH |Pseudomonas aeruginosa [TaxId: 287]
d4c5ja_ : (ASP182) (ASP202) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d4f5wa_ : (ASP216) (GLU249) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d7mdhd2 : (ALA281) (LEU338) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
d2qzwa_ : (PRO275) (LEU298) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1n3fa_ : (LYS7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1uh7a_ : (SER272) (ALA287) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Bread mold (Rhizopus chinensis) [TaxId: 4843]
d3iira_ : (PRO50) (PHE79) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Murraya koenigii [TaxId: 311449]
d1dxrh1 : (ASP56) (PRO79) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Rhodopseudomonas viridis [TaxId: 1079]
d1z90a1 : (VAL403) (GLY426) [view usage] : b.81.1.4 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |GlmU C-terminal domain-like |UDP-glucose pyrophosphorylase 2 (UDPGP 2) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3nv8b_ : (VAL251) (SER275) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d3v1la_ : (THR5) (GLY31) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d1r8na_ : (SER53) (PHE83) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |Serine protease inhibitor DrTI |Royal poinciana (Delonix regia) [TaxId: 72433]
d3t6dh2 : (ASP56) (PRO79) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |automated matches |Blastochloris viridis [TaxId: 1079]
d1dppa_ : (GLY119) (LEU139) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1mowa1 : (ASN104) (LYS145) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2ab5a1 : (ILE264) (LEU291) [view usage] : d.95.2.0 |Homing endonuclease-like |Homing endonucleases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1h70a_ : (SER200) (PRO215) [view usage] : d.126.1.3 |Pentein, beta/alpha-propeller |Pentein |Dimethylarginine dimethylaminohydrolase DDAH |Dimethylarginine dimethylaminohydrolase DDAH |Pseudomonas aeruginosa [TaxId: 287]
d3wu6e_ : (GLY587) (VAL618) [view usage] : d.14.1.10 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |ATP-dependent protease Lon (La), catalytic domain |ATP-dependent protease Lon (La), catalytic domain |Escherichia coli [TaxId: 562]
d2vbla_ : (LYS7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2icya1 : (VAL403) (GLY426) [view usage] : b.81.1.4 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |GlmU C-terminal domain-like |UDP-glucose pyrophosphorylase 2 (UDPGP 2) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3d5ta2 : (ALA240) (GLY297) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d1klta_ : (PRO24) (GLY43) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Chymase (mast cell protease I) |Human (Homo sapiens) [TaxId: 9606]
d1fq3a_ : (PRO24) (GLN48) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme B |Human (Homo sapiens) [TaxId: 9606]
d1slia1 : (ALA108) (PHE135) [view usage] : b.29.1.9 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Leech intramolecular trans-sialidase, N-terminal domain |Leech intramolecular trans-sialidase, N-terminal domain |North american leech (Macrobdella decora) [TaxId: 6405]
d2apra_ : (SER272) (ALA287) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Bread mold (Rhizopus chinensis) [TaxId: 4843]
d2pu7a_ : (THR5) (GLY31) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d1dtva_ : (ALA40) (PRO64) [view usage] : g.30.1.1 |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d2xzmc_ : (PRO166) (ASN198) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1h6aa2 : (ASP295) (TYR323) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Glucose-fructose oxidoreductase |Zymomonas mobilis [TaxId: 542]
d2kzna1 : (THR94) (ASN117) [view usage] : b.88.1.3 |Mss4-like |Mss4-like |SelR domain |Peptide methionine sulfoxide reductase MsrB |Bacillus subtilis [TaxId: 1423]
d2vblb_ : (LYS7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1n3ea_ : (LYS7) (LYS48) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.1, c.69, b.81, c.94, i.1, b.29, b.74, b.47, a.102, d.92, b.50, c.72, d.14, d.81, b.1, d.126, b.42, d.162, b.41,
b.88, d.95, d.86, d.387, g.14, a.250, g.30