Tableau information
Concept source: d1tu3a_ amino acid (a.a.) range (GLY32)(ALA77)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY32) (GLY43) H1
(GLY54) (CYS63) E2
(THR67) (ALA77) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 32.9° E2
E3 -150.5° 164.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ygaa_ : (PRO53) (SER80) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tvia_ : (GLU41) (LEU79) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |Hypothetical protein TM1509 |Thermotoga maritima [TaxId: 2336]
d2cbia2 : (ALA472) (ARG495) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d1b66a_ : (PRO122) (LYS142) [view usage] : d.96.1.2 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |6-pyruvoyl tetrahydropterin synthase |6-pyruvoyl tetrahydropterin synthase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wofa_ : (ASN142) (TYR161) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d1us7a_ : (PRO53) (SER80) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |HSP90 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2xpka2 : (ALA472) (ARG495) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |automated matches |Clostridium perfringens [TaxId: 1502]
d2ynaa_ : (CYS145) (TYR164) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tylonycteris bat coronavirus hku4 [TaxId: 694007]
d3i2xa_ : (GLU114) (HIS140) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d2o2pa_ : (VAL523) (PRO563) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jeya1 : (LEU312) (GLU330) [view usage] : b.131.1.1 |SPOC domain-like |SPOC domain-like |Ku70 subunit middle domain |Ku70 subunit middle domain |Human (Homo sapiens) [TaxId: 9606]
d2j62a2 : (ALA472) (GLY494) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d2w2db2 : (LEU604) (TYR636) [view usage] : h.4.2.1 |Antiparallel coiled-coil |Clostridium neurotoxins, "coiled-coil" domain |Clostridium neurotoxins, "coiled-coil" domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1uw4a_ : (ASN103) (VAL131) [view usage] : d.58.7.4 |Ferredoxin-like |RNA-binding domain, RBD |Smg-4/UPF3 |RNA processing protein UPF3x, RRM domain |Human (Homo sapiens) [TaxId: 9606]
d3hpvb2 : (TRP224) (PHE269) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Pseudomonas sp. [TaxId: 237609]
d1oupa_ : (ILE123) (PRO163) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d1wbca_ : (PRO110) (HIS137) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |chymotrypsin inhibitor WCI |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d3ea9a_ : (ASN142) (TYR161) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d2h6sa_ : (ASP255) (PRO275) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1znpa1 : (SER6) (LYS49) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d1pfca_ : (TRP417) (ARG443) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Guinea pig (Cavia porcellus) [TaxId: 10141]
d2xdra_ : (LEU119) (ARG140) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1ztcd_ : (ALA141) (GLY161) [view usage] : d.157.1.11 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |TM0894-like |Hypothetical protein TM0894 |Thermotoga maritima [TaxId: 2336]
d3vsca_ : (SER86) (LEU116) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Aeropyrum pernix [TaxId: 272557]
d1b77a1 : (SER4) (ASN43) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage RB69 [TaxId: 12353]
d4v19f_ : (LEU93) (MET164) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3f1pa_ : (GLY238) (ARG260) [view usage] : d.110.3.7 |Profilin-like |PYP-like sensor domain (PAS domain) |Hypoxia-inducible factor Hif2a, C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ztca1 : (ALA141) (GLY161) [view usage] : d.157.1.11 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |TM0894-like |Hypothetical protein TM0894 |Thermotoga maritima [TaxId: 2336]
d1k02a_ : (LEU11) (LEU28) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Old yellow enzyme (OYE) |Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
d1lgta2 : (LEU218) (GLY262) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) |Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]
d2hmxa_ : (SER10) (LYS31) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d2fwlb_ : (ASP66) (ALA87) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Thermus thermophilus, ba3 type [TaxId: 274]
d1znpb_ : (ALA7) (GLU48) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein Atu3615 |Agrobacterium tumefaciens [TaxId: 358]
d3rhma_ : (VAL523) (PRO563) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3vfgl1 : (GLN79) (ILE106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1nj1a3 : (SER132) (HIS173) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Prolyl-tRNA synthetase (ProRS) |Methanothermobacter thermautotrophicus [TaxId: 145262]
d2fug21 : (GLY92) (LYS121) [view usage] : c.47.1.21 |Thioredoxin fold |Thioredoxin-like |NQO2-like |NADH-quinone oxidoreductase chain 2, NQO2 |Thermus thermophilus [TaxId: 274]
d1ztcc_ : (ALA141) (GLY161) [view usage] : d.157.1.11 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |TM0894-like |Hypothetical protein TM0894 |Thermotoga maritima [TaxId: 2336]
d1ilr1_ : (ARG92) (SER113) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, d.58, i.1, c.79, c.82, b.47, d.157, d.92, b.50, d.122, c.37, d.104, c.47, d.96, b.6, d.32, b.1, d.110, b.42,
d.131, d.4, h.4, a.61, b.131