Tableau information
Concept source: d1r9ma1 amino acid (a.a.) range (ASN450)(CYS472)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN450) (CYS454) H1
(TYR456) (SER462) E2
(LYS466) (CYS472) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 99.7° E2
E3 69.0° 156.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ve3a_ : (LYS394) (LEU443) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d3osoa_ : (TYR54) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
d1j71a_ : (ASP301) (GLN322) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida tropicalis) [TaxId: 5482]
d4ejgg_ : (LEU444) (PRO493) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nyqa2 : (SER30) (ILE61) [view usage] : d.15.10.1 |beta-Grasp (ubiquitin-like) |TGS-like |TGS domain |Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain |Staphylococcus aureus [TaxId: 1280]
d2pg6a_ : (GLU442) (PRO493) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hc6a_ : (ALA100) (PRO130) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3l4da_ : (LYS426) (LYS474) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Leishmania infantum [TaxId: 5671]
d3a4ha_ : (GLN351) (PRO400) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Pseudonocardia autotrophica [TaxId: 2074]
d2k7ha_ : (PRO91) (GLU120) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Soybean (Glycine max) [TaxId: 3847]
d2gzoa1 : (VAL48) (GLY75) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypotheical protein SO3346 |Shewanella oneidensis [TaxId: 70863]
d3eyza2 : (ILE570) (GLU620) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d2v2ga_ : (LYS195) (PRO217) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Arenicola marina [TaxId: 6344]
d2v0sa_ : (SER208) (ARG236) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bkuc_ : (HIS78) (VAL100) [view usage] : d.58.18.4 |Ferredoxin-like |ACT-like |Nickel responsive regulator NikR, C-terminal domain |Nickel responsive regulator NikR, C-terminal domain |Escherichia coli [TaxId: 562]
d4or7a_ : (ASP129) (HIS162) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |automated matches |Klebsiella pneumoniae [TaxId: 1244085]
d4h24d_ : (GLN403) (LYS449) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d3ix9a_ : (ASP136) (GLU167) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1f9nb1 : (THR37) (TYR62) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d1ai9a_ : (LYS161) (ARG191) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
d1f9na1 : (THR37) (TYR62) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d1draa_ : (GLU129) (ARG158) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d1vs6n1 : (GLU82) (LEU115) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Escherichia coli [TaxId: 562]
d2cqma1 : (GLU82) (TYR125) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Human (Homo sapiens) [TaxId: 9606]
d3l4db_ : (LYS426) (LYS474) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Leishmania infantum [TaxId: 5671]
d1to6a_ : (ARG53) (PHE78) [view usage] : c.141.1.1 |Glycerate kinase I |Glycerate kinase I |Glycerate kinase I |Glycerate kinase GlxK |Neisseria meningitidis, (serogroup A) [TaxId: 487]
d2q15a_ : (ALA335) (VAL356) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d2o6ma_ : (THR4) (ALA47) [view usage] : d.4.1.3 |His-Me finger endonucleases |His-Me finger endonucleases |Intron-encoded homing endonucleases |Intron-encoded homing endonuclease I-PpoI |Slime mold (Physarum polycephalum) [TaxId: 5791]
d1wdta1 : (PRO275) (ARG304) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor G (EF-G), domain II |Thermus thermophilus, EF-G-2 [TaxId: 274]
d1dhia_ : (GLU129) (ARG158) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d2zdod_ : (LEU32) (TRP58) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d1tjea1 : (PRO29) (ALA62) [view usage] : d.15.10.1 |beta-Grasp (ubiquitin-like) |TGS-like |TGS domain |Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain |Escherichia coli [TaxId: 562]
d1khub_ : (SER357) (LYS381) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
d1wmda2 : (PRO236) (GLY253) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Alkaline serine protease kp-43, N-terminal domain |Bacillus sp. KSM-KP43 [TaxId: 109322]
d1drba_ : (GLU129) (ARG158) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d1i58a_ : (PRO417) (ASP450) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1foea2 : (ALA1280) (SER1308) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) |Mouse (Mus musculus) [TaxId: 10090]
d1wxoa_ : (THR123) (GLU152) [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
d3bbop1 : (VAL172) (LEU204) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d3t13a_ : (TYR54) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2qzwa_ : (ASP308) (GLN329) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d3qlwa_ : (LYS161) (ARG191) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
d3ibda_ : (GLU439) (PRO490) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zq9a1 : (CYS173) (PRO214) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |Probable dimethyladenosine transferase |Human (Homo sapiens) [TaxId: 9606]
d3gwma_ : (GLU100) (GLU129) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1gd8a_ : (VAL73) (LEU116) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Thermus thermophilus [TaxId: 274]
d2drca_ : (GLU129) (ARG159) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d1xxdc_ : (PRO6) (LEU27) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d2p85a_ : (GLU442) (PRO493) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qpva1 : (ALA34) (GLY53) [view usage] : d.129.3.8 |TBP-like |Bet v1-like |Atu1531-like |Uncharacterized protein Atu1531 |Agrobacterium tumefaciens [TaxId: 358]
d1t5ya2 : (LEU24) (SER48) [view usage] : d.17.6.3 |Cystatin-like |Pre-PUA domain |Nip7p homolog, N-terminal domain |Nip7p homolog, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1f3ga_ : (ASN142) (LYS168) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |Glucose-specific factor III (glsIII) |Escherichia coli [TaxId: 562]
d1faha_ : (GLY402) (LYS452) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1t2oc_ : (GLY167) (THR203) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d1i59b_ : (LYS418) (ASP450) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d3cbqa_ : (GLU144) (ASP169) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jc5a_ : (SER45) (LYS74) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
d1z10a_ : (GLU442) (PRO493) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ebsa_ : (GLU442) (PRO493) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2mcza1 : (PRO13) (CYS45) [view usage] : g.18.1.0 |Complement control module/SCR domain |Complement control module/SCR domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1coma_ : (LEU65) (MET93) [view usage] : d.79.1.2 |Bacillus chorismate mutase-like |YjgF-like |Chorismate mutase |Chorismate mutase |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.8, a.104, d.58, i.1, c.66, b.50, d.129, d.122, b.40, c.37, c.47, d.151, c.71, d.17, c.41, b.84, b.55, d.79, b.26,
a.4, d.67, d.150, d.15, b.43, d.4, g.18, b.16, b.100, c.141, d.310, d.188