Tableau information
Concept source: d3co2b_ amino acid (a.a.) range (GLY240)(GLU277)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY240) (ALA250) H1
(ALA250) (THR255) E2
(MET272) (GLU277) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -45.4° E2
E3 -78.5° -43.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2vh9a_ : (TYR9) (TRP27) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Tropaeolum majus [TaxId: 4020]
d1bp1a1 : (SER10) (ILE43) [view usage] : d.83.1.1 |Aha1/BPI domain-like |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Human (Homo sapiens) [TaxId: 9606]
d2i00b2 : (LEU282) (ILE299) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase EF2353 |Enterococcus faecalis [TaxId: 1351]
d3bz1o_ : (ALA209) (VAL227) [view usage] : f.4.1.4 |Transmembrane beta-barrels |OMPA-like |PsbO-like |automated matches |Thermosynechococcus elongatus [TaxId: 32046]
d1g6q1_ : (ASP333) (HIS348) [view usage] : c.66.1.6 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arginine methyltransferase |Arginine methyltransferase, HMT1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hqnb1 : (LEU15) (ASP48) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d1xiwd_ : (GLY103) (PHE121) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d2ehog2 : (ASP2) (ASP24) [view usage] : d.344.1.0 |GINS/PriA/YqbF domain |PriA/YqbF domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qxta_ : (ASN103) (SER131) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2fr0a2 : (ASP1448) (GLU1466) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Erythromycin synthase, eryAI, 1st ketoreductase module |Saccharopolyspora erythraea [TaxId: 1836]
d1cjda1 : (ASN17) (ASP48) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d1hzhh1 : (SER100) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Human (Homo sapiens), cluster 1 [TaxId: 9606]
d2i00a2 : (LEU282) (ILE299) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase EF2353 |Enterococcus faecalis [TaxId: 1351]
d1ub1a_ : (PHE158) (LYS178) [view usage] : d.10.1.3 |DNA-binding domain |DNA-binding domain |Methyl-CpG-binding domain, MBD |Methyl-CpG-binding protein 2, MECP2 |Chicken (Gallus gallus) [TaxId: 9031]
d2r73a_ : (TRP21) (SER36) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Trichosurus vulpecula [TaxId: 9337]
d2as0a2 : (SER379) (ARG396) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein PH1915, middle and C-terminal domains |Pyrococcus horikoshii [TaxId: 53953]
d2a2ga_ : (ASP11) (ASN27) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ui4a_ : (GLY-4) (LYS47) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dyma_ : (GLU224) (ASN243) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d2csoa1 : (ASP17) (HIS46) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d1wc7b1 : (ASN100) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d1k3eb_ : (SER3) (ASP43) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Secretion chaperone CesT |Escherichia coli [TaxId: 562]
d1dqlh_ : (SER105) (SER122) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Human (Homo sapiens), cluster 3 [TaxId: 9606]
d3dbia_ : (ALA267) (PRO296) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1cq3a_ : (THR113) (ASP168) [view usage] : b.27.1.1 |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |Cowpox virus [TaxId: 10243]
d1h6wa1 : (THR246) (ASN284) [view usage] : b.108.1.1 |Triple-stranded beta-helix |Phage fibre proteins |Middle part of short tail fibre protein gp12 |Middle part of short tail fibre protein gp12 |Bacteriophage T4 [TaxId: 10665]
d4r3fa_ : (GLY162) (PHE199) [view usage] : b.62.1.0 |Cyclophilin-like |Cyclophilin-like |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.2, b.29, c.66, c.93, f.4, b.60, b.121, b.1, d.108, b.62, a.4, d.26, d.198, d.83, b.27, b.108, d.10, d.344