Tableau information
Concept source: d1m5q1_ amino acid (a.a.) range (MSE82)(GLY109)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MSE82) (PHE93) H1
(MSE96) (GLU101) E2
(VAL105) (GLY109) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -170.2° E2
E3 -10.3° 163.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1k8kd1 : (ASN8) (SER46) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC2 (34 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d1q8ga_ : (PRO67) (ALA105) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |Cofilin (actin depolymerizing factor, ADF) |Human (Homo sapiens), non-muscle isoform [TaxId: 9606]
d1weka_ : (VAL80) (PRO110) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
d1e39a1 : (VAL80) (LYS97) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella frigidimarina [TaxId: 56812]
d1g8xa_ : (ALA205) (LEU262) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Genetically engineered molecular motor |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d2g0jb_ : (ALA46) (LEU71) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d1t3xa_ : (GLU8) (ALA43) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m5qh_ : (MSE82) (GLY109) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Sm-Like archaeal protein Smap3 |Pyrobaculum aerophilum [TaxId: 13773]
d1m5q1_ : (MSE82) (GLY109) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Sm-Like archaeal protein Smap3 |Pyrobaculum aerophilum [TaxId: 13773]
d1b7ba_ : (THR135) (LYS159) [view usage] : c.73.1.1 |Carbamate kinase-like |Carbamate kinase-like |Carbamate kinase |Carbamate kinase |Enterococcus faecium [TaxId: 1352]
d2zs7a_ : (ARG155) (HIS194) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3q93a_ : (ASP120) (GLU152) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m5qa_ : (MSE82) (GLY109) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Sm-Like archaeal protein Smap3 |Pyrobaculum aerophilum [TaxId: 13773]
d1wr8b_ : (VAL122) (LYS148) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Pyrococcus horikoshii [TaxId: 53953]
d1s14a_ : (SER1180) (ASP1217) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |Topoisomerase IV subunit B |Escherichia coli [TaxId: 562]
d3lmbb_ : (GLU112) (LYS163) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 194439]
d1scia_ : (GLY83) (THR110) [view usage] : c.69.1.20 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Hydroxynitrile lyase-like |Hydroxynitrile lyase |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1lc8a_ : (GLU276) (ARG303) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |L-threonine-O-3-phosphate decarboxylase CobD |Salmonella enterica [TaxId: 28901]
d1tdba_ : (LEU164) (VAL206) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d2aeua1 : (LYS273) (ARG303) [view usage] : c.67.1.8 |PLP-dependent transferase-like |PLP-dependent transferases |SelA-like |Hypothetical protein MJ0158 |Methanococcus jannaschii [TaxId: 2190]
d1hbxe_ : (ASN153) (ALA198) [view usage] : d.88.1.1 |SRF-like |SRF-like |SRF-like |Serum response factor (SRF) core |Human (Homo sapiens) [TaxId: 9606]
d4ee8a_ : (ALA250) (TYR287) [view usage] : d.313.1.0 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |automated matches |automated matches |Streptomyces cinnamonensis [TaxId: 1900]
d4blva_ : (ARG201) (ILE243) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4f7wa_ : (MET1153) (GLN1192) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
d4k6lf_ : (PRO200) (VAL238) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Salmonella enterica [TaxId: 90370]
d1mx0b3 : (ARG186) (PRO216) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |Topoisomerase VI-B subunit |Sulfolobus shibatae [TaxId: 2286]
d4f7wd_ : (MET1153) (GLN1192) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
d4n1ub_ : (ASP120) (VAL153) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |7,8-dihydro-8-oxoguanine triphosphatase Hmth1 |Human (Homo sapiens) [TaxId: 9606]
d1tq3a_ : (GLU395) (ASP415) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2j5gk_ : (GLU7) (HIS30) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Nostoc sp. PCC 7120 [TaxId: 103690]
d1lc7a_ : (GLU276) (ARG303) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |L-threonine-O-3-phosphate decarboxylase CobD |Salmonella enterica [TaxId: 28901]
d3g7ea_ : (GLU185) (HIS217) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |automated matches |Escherichia coli [TaxId: 562]
d2id2a_ : (THR328) (LYS366) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d1wr8a_ : (VAL122) (LYS148) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Pyrococcus horikoshii [TaxId: 53953]
d3ttza_ : (GLU193) (GLU230) [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1p8kz1 : (ASP40) (ASP73) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-AniI |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
d1tlja_ : (ASN110) (THR145) [view usage] : d.282.1.1 |SSo0622-like |SSo0622-like |SSo0622-like |Hypothetical protein SSo0622 |Sulfolobus solfataricus [TaxId: 2287]
d2j0oa1 : (SER219) (ASN249) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Invasin IpaD |Shigella flexneri [TaxId: 623]
d2j0na1 : (SER219) (ILE248) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Invasin IpaD |Shigella flexneri [TaxId: 623]
d1hbxa_ : (ASN153) (ALA198) [view usage] : d.88.1.1 |SRF-like |SRF-like |SRF-like |Serum response factor (SRF) core |Human (Homo sapiens) [TaxId: 9606]
d1x60a_ : (LYS20) (ILE50) [view usage] : d.58.52.0 |Ferredoxin-like |Sporulation related repeat |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1g0u1_ : (SER77) (ASN114) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qysa_ : (THR56) (GLY92) [view usage] : k.41.1.1 |New fold designs |New fold designs |alpha+beta folds |Top7 |Synthetic, computationally designed sequence
d3g75a_ : (TYR192) (GLU230) [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2m1ia_ : (VAL65) (ARG95) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Cenarchaeum symbiosum [TaxId: 46770]
d4prxa1 : (GLU183) (HIS217) [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3r9va_ : (SER219) (VAL246) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |automated matches |Shigella flexneri [TaxId: 623]
d4k4ie3 : (PHE444) (GLY475) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2euaa1 : (ALA208) (SER238) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Menaquinone-specific isochorismate synthase MenF |Escherichia coli [TaxId: 562]
d1srsb_ : (ASN153) (PHE197) [view usage] : d.88.1.1 |SRF-like |SRF-like |SRF-like |Serum response factor (SRF) core |Human (Homo sapiens) [TaxId: 9606]
d4bndb_ : (MET153) (VAL184) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d1e6yb2 : (ALA2079) (SER2113) [view usage] : d.58.31.2 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase alpha and beta chain N-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d1dk4a_ : (ILE42) (ASN72) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Archaeal inositol monophosphatase/fructose-1,6-bisphosphatase |Methanococcus jannaschii [TaxId: 2190]
d1jlsc_ : (VAL111) (PRO152) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d1kija2 : (SER185) (LYS219) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA gyrase B |Thermus thermophilus [TaxId: 274]
d2nrac2 : (PHE220) (ASP268) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |Replication initiation protein PI |Escherichia coli [TaxId: 562]
d2id2c_ : (THR328) (LYS366) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d9ruba1 : (ILE339) (GLY359) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rhodospirillum rubrum [TaxId: 1085]
d2czra1 : (SER6) (HIS35) [view usage] : c.52.4.1 |Restriction endonuclease-like |TBP-interacting protein-like |TBP-interacting protein-like |TBP-interacting protein |Thermococcus kodakaraensis [TaxId: 311400]
d2xvaa_ : (GLU155) (LYS197) [view usage] : c.66.1.44 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TehB-like |automated matches |Escherichia coli [TaxId: 511145]
d1lc5a_ : (GLU276) (ARG303) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |L-threonine-O-3-phosphate decarboxylase CobD |Salmonella enterica [TaxId: 28901]
d2gsaa_ : (GLY327) (PHE367) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Glutamate-1-semialdehyde aminomutase (aminotransferase) |Synechococcus sp., strain GR6 [TaxId: 1131]
d1bfea_ : (GLU395) (ASN415) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.58, c.108, c.82, d.117, c.66, c.14, d.122, c.37, d.153, d.151, e.7, c.73, d.38, c.61, c.52, a.4, d.109,
a.138, b.38, c.129, d.95, d.218, d.113, d.26, b.36, d.198, d.64, d.313, d.161, d.88, k.1, a.250, d.282, k.41