Tableau information
Concept source: d3dblf_ amino acid (a.a.) range (ASN18)(SER38)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN18) (LEU24) H1
(GLU25) (PRO29) E2
(ASP34) (SER38) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -53.6° E2
E3 -127.5° -139.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wnba_ : (PHE108) (VAL141) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Putative betaine aldehyde dehydrogenase YdcW |Escherichia coli [TaxId: 562]
d1xnwa2 : (THR278) (HIS299) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Propionyl-CoA carboxylase complex B subunit, PccB |Streptomyces coelicolor [TaxId: 1902]
d1dfoa_ : (ASP12) (PRO41) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Escherichia coli [TaxId: 562]
d1mzwa_ : (LEU148) (GLU176) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
d3dblf_ : (ASN18) (SER38) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1nxca_ : (ARG495) (LEU546) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d4hd0a_ : (GLU156) (HIS173) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d3dbhb_ : (ASN18) (SER38) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1dfob_ : (ASP12) (PRO41) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Escherichia coli [TaxId: 562]
d2i7db_ : (CYS165) (SER182) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1y5yc_ : (PRO2033) (LEU2053) [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
d1yula_ : (LEU145) (THR173) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2dd8s1 : (PRO324) (ASN347) [view usage] : d.318.1.1 |SARS receptor-binding domain-like |SARS receptor-binding domain-like |SARS receptor-binding domain-like |Spike protein S1 |SARS coronavirus [TaxId: 227859]
d3al4a_ : (TYR104) (ARG119) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d2yrwa3 : (THR386) (ARG409) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d4knsa1 : (ASP93) (ASN115) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Nitrosomonas europaea [TaxId: 228410]
d4ooua_ : (THR352) (SER378) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Cryptopygus antarcticus [TaxId: 187623]
d1eyya_ : (HIS371) (VAL387) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d3dbrd_ : (ASN18) (SER38) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1m3ia_ : (TRP428) (GLU446) [view usage] : f.9.1.1 |Perfringolysin |Perfringolysin |Perfringolysin |Perfringolysin |Clostridium perfringens [TaxId: 1502]
d1kywc2 : (PRO233) (GLY249) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1eyyb_ : (HIS371) (VAL387) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d3pnka_ : (ASP337) (GLY355) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1eqbb_ : (ASP12) (PRO41) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Escherichia coli [TaxId: 562]
d3dbrb_ : (ASN18) (SER38) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1fzda_ : (THR669) (ASN692) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), fibrinogen-420, alpha-E [TaxId: 9606]
d3dsda_ : (GLU156) (HIS173) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d3dbhf_ : (ASN18) (SER38) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, b.19, d.159, c.108, c.82, c.26, a.102, c.66, c.14, d.171, d.14, b.6, b.62, b.84, c.111, c.119, d.318, f.9