Tableau information
Concept source: d5croa_ amino acid (a.a.) range (GLN27)(GLU54)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN27) (GLY37) H1
(LYS39) (ASN45) E2
(VAL50) (GLU54) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -127.4° E2
E3 43.2° 155.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2grga1 : (PRO6) (GLY31) [view usage] : d.110.10.1 |Profilin-like |YNR034W-A-like |YNR034W-A-like |Uncharacterized protein YNR034W-A |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2fug13 : (GLU314) (GLU333) [view usage] : d.15.13.1 |beta-Grasp (ubiquitin-like) |Nqo1 middle domain-like |Nqo1 middle domain-like |NADH-quinone oxidoreductase chain 1, Nqo1 |Thermus thermophilus [TaxId: 274]
d1e9sf_ : (MET463) (LYS487) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Bacterial conjugative coupling protein TrwB |Escherichia coli [TaxId: 562]
d3bsda_ : (ARG238) (GLY271) [view usage] : b.75.1.1 |Bacteriochlorophyll A protein |Bacteriochlorophyll A protein |Bacteriochlorophyll A protein |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d1g9ng_ : (VAL101) (THR198) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d1ue0b_ : (ALA326) (VAL351) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d1uyqa1 : (GLY409) (PRO428) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Bacillus polymyxa [TaxId: 1406]
d2gmia1 : (PRO5) (GLU40) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]
d2d7oa1 : (GLY18) (VAL48) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin C |Human (Homo sapiens) [TaxId: 9606]
d3a7aa1 : (THR57) (LEU81) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |Two-domain LplA, N-terminal domain |Escherichia coli [TaxId: 562]
d1drma_ : (GLU194) (PRO233) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d3suqa2 : (LEU439) (ASP466) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d2bhza3 : (ALA353) (PRO383) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Deinococcus radiodurans [TaxId: 1299]
d1evka2 : (ARG245) (ASN268) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Escherichia coli [TaxId: 562]
d1xxfa_ : (ASN73) (LEU108) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor XI |Human (Homo sapiens) [TaxId: 9606]
d2uydx_ : (THR38) (GLY71) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |Serratia marcescens [TaxId: 615]
d2fug71 : (PHE37) (ASP71) [view usage] : d.82.2.2 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Nqo15-like |NADH-quinone oxidoreductase subunit 15, Nqo15 |Thermus thermophilus [TaxId: 274]
d3vn9a_ : (GLN91) (MET129) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oupa_ : (SER23) (ASN58) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d1ztpc_ : (ASP206) (ASP243) [view usage] : d.86.1.2 |eIF4e-like |eIF4e-like |BLES03-like |Basophilic leukemia expressed protein BLES03 |Human (Homo sapiens) [TaxId: 9606]
d4duca_ : (GLN403) (LYS449) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1a95b_ : (PRO116) (GLN137) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine-guanine PRTase (XPRTase) |Escherichia coli [TaxId: 562]
d4ohfb_ : (LYS247) (ASN269) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d4g63a_ : (LYS247) (ASN269) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d2ooxa1 : (PRO504) (LYS534) [view usage] : d.129.6.2 |TBP-like |KA1-like |Ssp2 C-terminal domain-like |Snf1-like protein kinase ssp2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3dtfa_ : (ALA67) (PHE93) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1h16a_ : (ARG712) (ARG738) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d3uk2a_ : (SER250) (GLU278) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1fx4a_ : (SER1062) (ALA1093) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Receptor-type monomeric adenylyl cyclase |Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]
d2bdea1 : (LYS247) (ASN269) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 446]
d1ufna_ : (ASN8) (PHE29) [view usage] : d.217.1.1 |SAND domain-like |SAND domain-like |SAND domain |Putative nuclear protein homolog 5830484a20rik |Mouse (Mus musculus) [TaxId: 10090]
d1ejia_ : (SER233) (ARG270) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d1k4ra_ : (SER1) (LEU27) [view usage] : i.17.1.1 |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Dengue virus [TaxId: 12637]
d1xbpg2 : (ALA46) (THR71) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Deinococcus radiodurans [TaxId: 1299]
d3rmbc2 : (LEU439) (ASP466) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d4ohfd_ : (LYS247) (ASN269) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d2onra_ : (VAL180) (SER201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d2oz0a2 : (SER12) (THR37) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Flavocytochrome b2, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4macb_ : (THR94) (PRO119) [view usage] : d.15.2.0 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2dtge6 : (PHE256) (GLY306) [view usage] : g.3.9.1 |Knottins (small inhibitors, toxins, lectins) |Growth factor receptor domain |Growth factor receptor domain |Insulin receptor |Human (Homo sapiens) [TaxId: 9606]
d1xsia3 : (ASP598) (THR621) [view usage] : b.71.1.4 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |Putative glucosidase YicI, domain 3 |Putative glucosidase YicI, domain 3 |Escherichia coli [TaxId: 562]
d1f51a_ : (ASP158) (ASP192) [view usage] : d.123.1.1 |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Bacillus subtilis [TaxId: 1423]
d2pu3a_ : (SER23) (GLU60) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |automated matches |Vibrio salmonicida [TaxId: 316275]
d1udza_ : (GLY325) (VAL351) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d3tgva_ : (ARG62) (ASP96) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d1gt6a_ : (CYS41) (ASP70) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
d1k32a3 : (ALA607) (GLU631) [view usage] : b.69.9.1 |7-bladed beta-propeller |Tricorn protease domain 2 |Tricorn protease domain 2 |Tricorn protease domain 2 |Thermoplasma acidophilum [TaxId: 2303]
d1ymqa1 : (GLU55) (VAL75) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
d2hrfa_ : (THR230) (ASP259) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gs3a_ : (PHE32) (ASN55) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ur6a_ : (MET1) (GLY39) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch5b [TaxId: 9606]
d1nlzd_ : (TYR99) (ARG133) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
d1qhna_ : (GLY35) (PRO66) [view usage] : c.37.1.3 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Chloramphenicol phosphotransferase |Chloramphenicol phosphotransferase |Streptomyces venezuelae [TaxId: 54571]
d1h54b2 : (ASN177) (PRO209) [view usage] : b.30.5.3 |Supersandwich |Galactose mutarotase-like |Glycosyltransferase family 36 N-terminal domain |Lactobacillus maltose phosphorylase, N-terminal domain |Lactobacillus brevis [TaxId: 1580]
d3bb9b_ : (MSE78) (GLY114) [view usage] : d.17.4.16 |Cystatin-like |NTF2-like |SO0125-like |Uncharacterized protein Sfri1973 |Shewanella frigidimarina [TaxId: 56812]
d1cm5a_ : (ARG712) (ARG738) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1vw4n_ : (THR47) (VAL68) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1svba2 : (SER1) (LEU27) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Tick-borne encephalitis virus [TaxId: 11084]
d1we5a3 : (ASP598) (THR621) [view usage] : b.71.1.4 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |Putative glucosidase YicI, domain 3 |Putative glucosidase YicI, domain 3 |Escherichia coli [TaxId: 562]
d3zqda2 : (LYS88) (SER119) [view usage] : b.160.1.1 |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |L,D-transpeptidase catalytic domain-like |automated matches |Bacillus subtilis [TaxId: 224308]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.69, c.94, a.104, d.58, b.69, i.1, c.108, c.26, b.30, b.47, d.129, d.144, c.37, c.7, d.104, c.47, e.17,
b.1, b.45, d.20, d.110, d.17, c.61, d.15, b.51, b.71, d.4, d.120, d.82, d.86, i.17, a.35, g.3, d.47, f.10, b.75, d.35,
d.172, b.160, d.123, d.217