Tableau information
Concept source: d1o9ba2 amino acid (a.a.) range (THR82)(ASN105)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR82) (VAL88) H1
(ASN92) (ASP98) E2
(TYR100) (ASN105) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -137.4° E2
E3 60.2° 162.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2wlwa_ : (PRO30) (THR68) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d2vkra_ : (TYR6) (PRO24) [view usage] : d.58.1.3 |Ferredoxin-like |4Fe-4S ferredoxins |Archaeal ferredoxins |automated matches |Acidianus ambivalens [TaxId: 2283]
d3tnla1 : (SER88) (ILE111) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1i27a_ : (SER485) (LEU515) [view usage] : a.4.5.30 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal domain of the rap74 subunit of TFIIF |C-terminal domain of the rap74 subunit of TFIIF |Human (Homo sapiens) [TaxId: 9606]
d3tozc1 : (SER88) (ILE111) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d2biya_ : (ARG78) (LEU98) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nida_ : (ASN227) (THR259) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d2uzta_ : (HIS39) (GLU64) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3fcua_ : (ASN227) (THR259) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d3atyb_ : (PRO113) (THR164) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d3fcuc_ : (ASN227) (THR259) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d3juha_ : (ASN35) (GLU55) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d1kfia2 : (ASP290) (ARG319) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d1r6ea_ : (ILE137) (PRO164) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |Effector protein SopE2 |Salmonella typhimurium [TaxId: 90371]
d1n1ha_ : (ALA611) (SER642) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Reovirus polymerase lambda3 |Reovirus [TaxId: 10891]
d2b0aa1 : (ASN153) (GLU186) [view usage] : c.8.8.1 |The "swivelling" beta/beta/alpha domain |Putative cyclase |Putative cyclase |Hypothetical protein MJ0783 |Methanococcus jannaschii [TaxId: 2190]
d1na6b1 : (ASP110) (SER141) [view usage] : b.142.1.1 |DNA-binding pseudobarrel domain |DNA-binding pseudobarrel domain |Type II restriction endonuclease effector domain |Restriction endonuclease EcoRII, N-terminal domain |Escherichia coli [TaxId: 562]
d1od4a1 : (GLU1661) (LYS1691) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3tnlb1 : (SER88) (ILE111) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d3phbt_ : (LEU35) (GLY71) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uyrb1 : (THR1659) (LYS1691) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4e2ba_ : (PRO113) (THR164) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1bf2a2 : (GLY717) (SER749) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Isoamylase |Pseudomonas amyloderamosa [TaxId: 32043]
d1bcpf_ : (TRP52) (ILE91) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Pertussis toxin S5 subunit |Bordetella pertussis [TaxId: 520]
d2joda1 : (LYS28) (ASN60) [view usage] : g.76.1.1 |Hormone receptor domain |Hormone receptor domain |Hormone receptor domain |Pituitary adenylate cyclase-activating polypeptide type I receptor |Human (Homo sapiens) [TaxId: 9606]
d3i4oa_ : (GLY39) (LYS73) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1rtda2 : (ASP113) (TYR146) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3i4ob_ : (SER38) (LYS73) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1enfa2 : (LYS151) (TYR179) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin H, SEH |Staphylococcus aureus [TaxId: 1280]
d1usvb_ : (CYS16) (GLU51) [view usage] : d.83.2.1 |Aha1/BPI domain-like |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ddba1 : (GLY105) (CYS137) [view usage] : d.111.1.0 |PR-1-like |PR-1-like |automated matches |automated matches |Pseudechis porphyriacus [TaxId: 8671]
d1juva_ : (SER163) (LYS193) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Bacteriophage T4 [TaxId: 10665]
d1hbmb1 : (THR264) (THR296) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3kxma_ : (GLU35) (GLU55) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Maize (Zea mays) [TaxId: 4577]
d2ouha_ : (ILE15) (ARG42) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Thrombospondin 1 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1wc5c_ : (SER1163) (VAL1194) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Adenylate cyclase CyaC |Spirulina platensis [TaxId: 118562]
d4dgma_ : (GLU35) (GLU55) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Maize (Zea mays) [TaxId: 4577]
d1xx5c1 : (GLY114) (CYS148) [view usage] : d.111.1.1 |PR-1-like |PR-1-like |PR-1-like |automated matches |Chinese cobra (Naja atra) [TaxId: 8656]
d4l3ja_ : (ARG64) (GLN84) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1od2a1 : (THR1659) (LYS1691) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1gnza_ : (ASN112) (ASN150) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]
d3tozb1 : (SER88) (ILE111) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d2v4jb2 : (PRO31) (ALA56) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit beta, DsrB |Desulfovibrio vulgaris [TaxId: 881]
d1jt8a_ : (PRO50) (ASP79) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Archaeal initiation factor-1a, aIF1a |Methanococcus jannaschii [TaxId: 2190]
d1qnxa_ : (THR154) (GLY190) [view usage] : d.111.1.1 |PR-1-like |PR-1-like |PR-1-like |Insect allergen 5 (AG5) |Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]
d4ql5a_ : (GLY38) (LYS72) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d2f7ee_ : (HIS39) (LEU59) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |cAMP-dependent PK, catalytic subunit |Cow (Bos taurus) [TaxId: 9913]
d1akoa_ : (THR198) (GLN235) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA-repair enzyme exonuclease III |Escherichia coli [TaxId: 562]
d3bsha1 : (GLY120) (LEU153) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Barley (Hordeum vulgare) [TaxId: 4513]
d3toza1 : (SER88) (ILE111) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d4ql5b_ : (GLY38) (LYS72) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1ewia_ : (LEU65) (VAL101) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d1chpd_ : (SER60) (ASN103) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Cholera toxin |Vibrio cholerae [TaxId: 666]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, d.58, b.69, b.29, c.56, c.14, d.144, b.40, d.151, c.71, c.8, b.62, a.4, d.111, d.15, c.58, b.71, a.89, d.83,
c.84, g.76, a.168, b.142