Tableau information
Concept source: d4pmya_ amino acid (a.a.) range (LEU185)(ASN213)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU185) (SER191) E1
(SER191) (ALA196) H2
(ALA196) (ASN213) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 67.3° H2
H3 169.6° -111.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1dmra2 : (TYR57) (GLY79) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Dimethylsulfoxide reductase (DMSO reductase) |Rhodobacter capsulatus [TaxId: 1061]
d4nbta_ : (GLY126) (THR159) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Acholeplasma laidlawii [TaxId: 441768]
d3oxnb_ : (THR287) (ILE324) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d1o63b_ : (ARG170) (ASP201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1o64a_ : (ARG170) (GLU204) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d4fila_ : (HIS269) (ALA301) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4g16a_ : (LYS198) (LEU243) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q7ma1 : (PHE315) (ALA346) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1wpxa_ : (THR388) (GLY418) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1o64b_ : (ARG170) (ASP201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1k1ga_ : (THR134) (ASN172) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |RNA splicing factor 1 |Human (Homo sapiens) [TaxId: 9606]
d1d8ta3 : (THR167) (SER197) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d4erhb_ : (LYS217) (LEU245) [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Salmonella enterica [TaxId: 588858]
d3zkwb_ : (ILE279) (VAL309) [view usage] : c.92.2.4 |Chelatase-like |"Helical backbone" metal receptor |TM0189-like |Enterochelin uptake protein CeuE |Campylobacter jejuni [TaxId: 197]
d1b4ub_ : (ALA2) (GLN46) [view usage] : c.56.6.1 |Phosphorylase/hydrolase-like |LigB-like |LigB-like |LigB subunit of an aromatic-ring-opening dioxygenase LigAB |Pseudomonas paucimobilis [TaxId: 13689]
d1mvma_ : (ARG83) (LYS100) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Murine minute virus, strain i [TaxId: 10794]
d3r41b_ : (VAL271) (ALA300) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d1vrra_ : (VAL4) (ILE34) [view usage] : c.52.1.21 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BstyI |Restriction endonuclease BstyI |Geobacillus stearothermophilus [TaxId: 1422]
d1n06b_ : (ARG113) (LYS162) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1r9la_ : (VAL233) (ILE257) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glycine betaine-binding periplasmic protein ProX |Escherichia coli [TaxId: 562]
d2wr7b1 : (ILE51) (LEU74) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza a virus (a/singapore/1/1957(h2n2)) [TaxId: 382781]
d1usyg_ : (VAL168) (ASP201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d2v3ga_ : (ALA252) (ILE280) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Clostridium thermocellum [TaxId: 1515]
d4lyra_ : (ARG22) (GLY56) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1jdea3 : (PRO37) (ASN76) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d4jcca_ : (ILE291) (LEU320) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d1z7nf1 : (ARG180) (ASP204) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Lactococcus lactis [TaxId: 1358]
d2odfd_ : (MET223) (GLU256) [view usage] : c.56.5.9 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |FGase-like |Hypothetical protein Atu2144 |Agrobacterium tumefaciens [TaxId: 358]
d2a9ya_ : (LEU162) (HIS186) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Adenosine kinase |Toxoplasma gondii [TaxId: 5811]
d3svlb_ : (GLU146) (PHE182) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2x9ry_ : (GLY327) (ARG356) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1woua_ : (PRO94) (PHE120) [view usage] : c.47.1.16 |Thioredoxin fold |Thioredoxin-like |Txnl5-like |Putative 42-9-9 protein (thioredoxin containing protein Txnl5) |Human (Homo sapiens) [TaxId: 9606]
d3r41a_ : (VAL271) (ALA300) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d1d8tb3 : (THR167) (SER197) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d2o2sa_ : (SER127) (ALA154) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Toxoplasma gondii [TaxId: 383379]
d1b9ha_ : (CYS359) (ALA388) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) |Amycolatopsis mediterranei [TaxId: 33910]
d4lyqa_ : (ARG22) (MET55) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d3k4ha_ : (THR10) (GLY43) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Bacillus cytotoxicus [TaxId: 315749]
d1em8d_ : (ALA101) (THR127) [view usage] : c.126.1.1 |DNA polymerase III psi subunit |DNA polymerase III psi subunit |DNA polymerase III psi subunit |DNA polymerase III psi subunit |Escherichia coli [TaxId: 562]
d2m1za_ : (VAL79) (LEU102) [view usage] : c.44.2.0 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d3ugja7 : (ARG1253) (GLY1295) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |FGAM synthase PurL, amidotransferase domain |Salmonella enterica [TaxId: 90371]
d1o63a_ : (ARG170) (GLU204) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d2r7ab_ : (ARG247) (TRP275) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Shigella dysenteriae [TaxId: 622]
d1keza_ : (ASP251) (GLY279) [view usage] : c.69.1.22 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterase domain of polypeptide, polyketide and fatty acid synthases |Erythromycin polyketide synthase |Saccharopolyspora erythraea [TaxId: 1836]
d1e60a2 : (TYR57) (GLY79) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Dimethylsulfoxide reductase (DMSO reductase) |Rhodobacter capsulatus [TaxId: 1061]
d4pe3a_ : (LEU172) (GLY207) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349101]
d3orse_ : (PRO29) (ALA51) [view usage] : c.23.8.0 |Flavodoxin-like |N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d4pyka_ : (THR214) (SER236) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Catechol O-methyltransferase, COMT |Human (Homo sapiens) [TaxId: 9606]
d1b9ia_ : (ASP358) (ALA388) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) |Amycolatopsis mediterranei [TaxId: 33910]
d2vd3a1 : (LYS183) (ALA211) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Methanobacterium thermoautotrophicum [TaxId: 187420]
d1usyh_ : (VAL168) (ASP201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1dpza_ : (LYS178) (PRO207) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thermus thermophilus [TaxId: 274]
d2vd2a_ : (ASP177) (THR211) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1k3va_ : (ARG82) (ASP99) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Porcine parvovirus [TaxId: 10796]
d3tb4a_ : (ASP113) (GLY137) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1tuia3 : (VAL168) (GLU208) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus aquaticus [TaxId: 271]
d1ogca_ : (GLU65) (ASN86) [view usage] : c.133.1.1 |RbsD-like |RbsD-like |RbsD-like |Ribose transport protein RbsD |Bacillus subtilis [TaxId: 1423]
d1v06a_ : (GLY218) (GLY261) [view usage] : b.145.1.0 |AXH domain |AXH domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2fyia1 : (HIS167) (GLY215) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d4wt7a_ : (GLY170) (PRO199) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
d4ur8a_ : (THR208) (GLY232) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d1usye_ : (ARG170) (ASP201) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d2xyqb_ : (LYS95) (CYS128) [view usage] : g.86.1.1 |Coronavirus NSP10-like |Coronavirus NSP10-like |Coronavirus NSP10-like |automated matches |SARS coronavirus [TaxId: 227859]
d2fyic_ : (HIS167) (GLY215) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d4p47a_ : (PHE151) (GLY188) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ochrobactrum anthropi [TaxId: 439375]
d2r7aa_ : (ARG247) (TRP275) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Shigella dysenteriae [TaxId: 622]
d3tg2a_ : (ASP113) (GLY137) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1c8da_ : (ARG81) (ASP99) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Canine parvovirus [TaxId: 10788]
d1b1ya_ : (GLN11) (GLN36) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Barley (Hordeum vulgare) [TaxId: 4513]
d2r48a1 : (LYS76) (LEU97) [view usage] : c.44.2.2 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |PTS system, Fructose specific IIB subunit-like |Mannose-specific enzyme IIBCA component ManP, N-terminal domain |Bacillus subtilis [TaxId: 1423]
d1a05a_ : (LYS183) (PRO212) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thiobacillus ferrooxidans [TaxId: 920]
d3zn2a_ : (ASN167) (LYS204) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, b.19, c.69, c.81, c.94, c.2, c.56, c.92, c.66, c.77, c.93, c.72, c.23, d.144, c.37, c.47, b.121, c.33, c.133,
d.79, d.142, c.52, b.145, b.43, c.44, e.38, d.51, c.126, g.86