Tableau information
Concept source: d1jb0b_ amino acid (a.a.) range (LEU516)(GLY610)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU516) (PRO520) E1
(PRO520) (ASP546) H2
(SER577) (GLY610) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -87.1° H2
H3 108.6° -164.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ebda2 : (LEU175) (GLY224) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d1kppa_ : (GLY107) (GLU138) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1v9sb_ : (MSE1) (MSE44) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1mu7a1 : (LEU301) (HIS345) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d4gwoa_ : (VAL159) (GLN191) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Salmonella enterica [TaxId: 99287]
d2oipc2 : (LYS284) (LYS311) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Cryptosporidium hominis [TaxId: 237895]
d1vtmp_ : (SER65) (GLY135) [view usage] : a.24.5.1 |Four-helical up-and-down bundle |TMV-like viral coat proteins |TMV-like viral coat proteins |Tobacco mosaic virus coat protein |Tobacco mosaic virus, vulgare strain [TaxId: 12242]
d3dmpa_ : (LEU10) (ARG52) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2gzoa1 : (SER146) (SER172) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypotheical protein SO3346 |Shewanella oneidensis [TaxId: 70863]
d1ei7a_ : (ASP66) (GLY135) [view usage] : a.24.5.1 |Four-helical up-and-down bundle |TMV-like viral coat proteins |TMV-like viral coat proteins |Tobacco mosaic virus coat protein |Tobacco mosaic virus, vulgare strain [TaxId: 12242]
d2a6rc_ : (LYS2) (THR37) [view usage] : d.298.1.1 |RelE-like |RelE-like |YoeB/Txe-like |Toxin YoeB |Escherichia coli [TaxId: 562]
d1vsta_ : (PRO2) (LEU47) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Sulfolobus solfataricus [TaxId: 2287]
d1gsja_ : (ALA194) (GLY229) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Escherichia coli [TaxId: 562]
d2ehja_ : (LYS1) (ALA45) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2e55a_ : (ILE2) (LYS44) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d1ocba_ : (GLY96) (VAL132) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]
d4alua_ : (PRO125) (GLY162) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mu7b1 : (LEU301) (HIS345) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1bg0a2 : (HIS284) (ASN305) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d1ciya2 : (ARG265) (ASN290) [view usage] : b.77.2.1 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]
d1o5oa_ : (ASN3) (THR45) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Thermotoga maritima [TaxId: 2336]
d3voia_ : (GLY83) (LYS116) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1l5pa_ : (LYS46) (ALA74) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Trichomonas vaginalis [TaxId: 5722]
d1mu9b1 : (LEU301) (HIS345) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d4f5wa_ : (ALA254) (ALA302) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d2gqra_ : (SER198) (GLY233) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3r3qa_ : (GLY124) (LEU151) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3voja_ : (GLY83) (LYS116) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d1i5ea_ : (VAL4) (LEU48) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Bacillus caldolyticus [TaxId: 1394]
d2b2uc1 : (GLU54) (LYS95) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |ATP-dependent helicase CHD1 (Chromo domain protein 1) |Human (Homo sapiens) [TaxId: 9606]
d4kood_ : (SER158) (LYS174) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4fe2a_ : (CYS198) (GLN232) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4fgrb_ : (CYS198) (LEU234) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2f20a1 : (LYS208) (VAL229) [view usage] : d.303.1.1 |BB1717-like |BB1717-like |BB1717-like |Hypothetical protein BT1218 |Bacteroides thetaiotaomicron [TaxId: 818]
d2b2wc1 : (GLU54) (LYS95) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |ATP-dependent helicase CHD1 (Chromo domain protein 1) |Human (Homo sapiens) [TaxId: 9606]
d2b78a1 : (MET1) (PRO27) [view usage] : b.122.1.9 |PUA domain-like |PUA domain-like |Hypothetical RNA methyltransferase domain (HRMD) |Hypothetical protein SMu776, N-terminal domain |Streptococcus mutans [TaxId: 1309]
d1vpqa_ : (TYR187) (ASP209) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |Hypothetical protein TM1631 |Thermotoga maritima [TaxId: 2336]
d2cyga1 : (ASN200) (PHE221) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Plant beta-glucanases |Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]
d5acna1 : (ILE570) (LEU590) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Aconitase A, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1ybja_ : (ASN118) (ASN151) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d1te6a1 : (GLU419) (LEU433) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Human (Homo sapiens), gamma isoform [TaxId: 9606]
d2dv5a_ : (GLY240) (VAL263) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d1jy1a1 : (TYR302) (HIS345) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1o5ob_ : (ASN3) (THR45) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Thermotoga maritima [TaxId: 2336]
d1gs5a_ : (ALA194) (GLY229) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.6, c.90, d.117, d.144, c.95, b.122, d.20, c.73, d.143, c.8, b.77, c.61, b.34, d.128, d.15, a.24, d.298, d.136,
f.29, d.18, d.310, d.387, d.35, d.303