Tableau information
Concept source: d1fm4a_ amino acid (a.a.) range (GLY110)(ASN159)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY110) (THR122) E1
(LYS129) (HIS154) H2
(HIS154) (ASN159) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 149.1° H2
H3 64.8° -106.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1i6ma_ : (ALA181) (ALA220) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d4n72c_ : (ARG591) (MET629) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d1urcc_ : (PRO155) (VAL197) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK2 |Human (Homo sapiens) [TaxId: 9606]
d1ckqa_ : (ILE230) (THR275) [view usage] : c.52.1.1 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRI |Restriction endonuclease EcoRI |Escherichia coli [TaxId: 562]
d1k1ga_ : (ALA205) (GLY252) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |RNA splicing factor 1 |Human (Homo sapiens) [TaxId: 9606]
d2jf6b_ : (GLU265) (LEU317) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rauvolfia serpentina [TaxId: 4060]
d2vx4a_ : (ILE215) (SER235) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
d1i6ka_ : (ALA181) (ALA220) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d1okka2 : (TYR268) (GLY293) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |GTPase domain of the signal sequence recognition protein Ffh |Thermus aquaticus [TaxId: 271]
d2csba5 : (LEU3) (ASP49) [view usage] : a.267.1.1 |Topoisomerase V catalytic domain-like |Topoisomerase V catalytic domain-like |Topoisomerase V catalytic domain-like |Topoisomerase V, catalytic domain |Methanopyrus kandleri [TaxId: 2320]
d1qzta_ : (ALA238) (ALA258) [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Methanosarcina thermophila [TaxId: 2210]
d4nfma_ : (ASP189) (GLY235) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b7ca3 : (LYS5) (GLU48) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor eEF-1alpha, N-terminal (G) domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2o34a1 : (GLU33) (SER72) [view usage] : d.96.2.2 |T-fold |ApbE-like |DVU1097-like |Hypothetical protein DVU1097 |Desulfovibrio vulgaris [TaxId: 881]
d2p0ra_ : (ILE89) (PRO118) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Human (Homo sapiens) [TaxId: 9606]
d1zbma1 : (ASN177) (TYR216) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein AF1704 |Archaeoglobus fulgidus [TaxId: 2234]
d4d9eb_ : (ARG152) (SER187) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d2dgkc_ : (VAL420) (ILE457) [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
d1dpba_ : (ARG599) (LEU637) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide acetyltransferase |Azotobacter vinelandii [TaxId: 354]
d1whna_ : (THR413) (GLY442) [view usage] : d.50.1.1 |dsRBD-like |dsRNA-binding domain-like |Double-stranded RNA-binding domain (dsRBD) |tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) |Mouse (Mus musculus) [TaxId: 10090]
d3a3ua_ : (ALA178) (ALA219) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein TTHA1568 |Thermus thermophilus [TaxId: 274]
d1nbfa_ : (GLY212) (MET245) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |Human (Homo sapiens) [TaxId: 9606]
d4napd_ : (THR159) (LEU185) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d3gj4c_ : (GLN8) (GLU36) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ran |Human (Homo sapiens) [TaxId: 9606]
d1esca_ : (PRO7) (PHE35) [view usage] : c.23.10.1 |Flavodoxin-like |SGNH hydrolase |Esterase |Esterase |Streptomyces scabies [TaxId: 1930]
d1t17a_ : (MET1) (TYR27) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |Hypothetical protein CC1736 |Caulobacter crescentus [TaxId: 155892]
d2ihwa_ : (MET383) (LEU420) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2mf2a_ : (LEU103) (ASN132) [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 1280]
d1r5ja_ : (ALA236) (LYS255) [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Streptococcus pyogenes [TaxId: 1314]
d1eb6a_ : (THR1) (LYS45) [view usage] : d.92.1.12 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Fungal zinc peptidase |Fungal zinc peptidase |Aspergillus oryzae, deuterolysin [TaxId: 5062]
d1qria_ : (ILE230) (LYS277) [view usage] : c.52.1.1 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoRI |Restriction endonuclease EcoRI |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, c.79, c.26, d.92, c.77, d.129, c.23, d.144, c.37, d.3, d.96, c.43, c.52, b.34, d.50, d.51, a.267